RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 TCHHQ07283 1943 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 POTEB3A0JP26 581 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 DDX11L8A8MPP1 907 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 HAS3O00219 553 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 HBP1O60381 514 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 LYPLA2O95372 231 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 OATP04181 439 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 PSMC6P62333 389 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 NBPF20Q3BBV1 942 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 TPRNQ4KMQ1 711 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 HYIQ5T013 277 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 POTEBQ6S5H4 581 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 SHC4Q6S5L8 630 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 OTUD6AQ7L8S5 288 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 NECAB2Q7Z6G3 386 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 KCTD17Q8N5Z5 321 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 C7orf31Q8N865 590 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 ATP8B4Q8TF62 1192 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 BBXQ8WY36 941 aaPredicted RBP15.24■□□□□ 0.03
VMP1-210ENST00000589823 CCDC43Q96MW1 224 aaKnown RBP15.24■□□□□ 0.03
VMP1-210ENST00000589823 NACC1Q96RE7 527 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 SENP6Q9GZR1 1112 aaPredicted RBP15.24■□□□□ 0.03
VMP1-210ENST00000589823 RNPEPQ9H4A4 650 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 C11orf49Q9H6J7 331 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 KIAA1024Q9UPX6 916 aa15.24■□□□□ 0.03
VMP1-210ENST00000589823 A0A0U1RQG5 324 aaPredicted RBP15.23■□□□□ 0.03
VMP1-210ENST00000589823 GOLGA6L22H0YM25 854 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 ATP4AP20648 1035 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 CMA1P23946 247 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 MNX1P50219 401 aaPredicted RBP15.23■□□□□ 0.03
VMP1-210ENST00000589823 ITGA7Q13683 1181 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 FAM47CQ5HY64 1035 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 RESP18Q5W5W9 173 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 POTEGQ6S5H5 508 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 USP49Q70CQ1 688 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 TMEM87AQ8NBN3 555 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 DIS3LQ8TF46 1054 aaKnown RBP15.23■□□□□ 0.03
VMP1-210ENST00000589823 PAWRQ96IZ0 340 aaKnown RBP15.23■□□□□ 0.03
VMP1-210ENST00000589823 SEZ6LQ9BYH1 1024 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 DDX19AQ9NUU7 478 aaKnown RBP15.23■□□□□ 0.03
VMP1-210ENST00000589823 WRAP73Q9P2S5 460 aaPredicted RBP15.23■□□□□ 0.03
VMP1-210ENST00000589823 SEPT9Q9UHD8 586 aaPredicted RBP15.23■□□□□ 0.03
VMP1-210ENST00000589823 DNM3Q9UQ16 869 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 BRCA2P51587 3418 aa15.23■□□□□ 0.03
VMP1-210ENST00000589823 A0A1W2PQ27 194 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 A0A1W2PQ64 194 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 A0A1W2PQD8 194 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 RRN3P2A6NIE6 340 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 SMIM10L2AP0DMW4 78 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 SMIM10L2BP0DMW5 78 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 GNAT1P11488 350 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 XRCC6P12956 609 aaKnown RBP eCLIP15.22■□□□□ 0.03
VMP1-210ENST00000589823 YWHABP31946 246 aaKnown RBP15.22■□□□□ 0.03
VMP1-210ENST00000589823 SOX10P56693 466 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 PPFIA1Q13136 1202 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 GRB10Q13322 594 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 KARSQ15046 597 aaKnown RBP15.22■□□□□ 0.03
VMP1-210ENST00000589823 ECM1Q16610 540 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 ZNF484Q5JVG2 852 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 NFRKBQ6P4R8 1299 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 CCDC73Q6ZRK6 1079 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 MRPS27Q92552 414 aaKnown RBP15.22■□□□□ 0.03
VMP1-210ENST00000589823 PNMA5Q96PV4 448 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 PLIN2Q99541 437 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 PYM1Q9BRP8 204 aaKnown RBP15.22■□□□□ 0.03
VMP1-210ENST00000589823 ANKEF1Q9NU02 776 aa15.22■□□□□ 0.03
VMP1-210ENST00000589823 NRCAMQ92823 1304 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 C17orf102A2RUQ5 167 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 ARVCFO00192 962 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 PRPF40AO75400 957 aaKnown RBP15.21■□□□□ 0.03
VMP1-210ENST00000589823 COL6A1P12109 1028 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 INSRRP14616 1297 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 PLCG1P19174 1290 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 PTPN11Q06124 597 aaPredicted RBP15.21■□□□□ 0.03
VMP1-210ENST00000589823 TMEM119Q4V9L6 283 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 RRAGBQ5VZM2 374 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 SLC39A5Q6ZMH5 540 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 ANO5Q75V66 913 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 FSIP1Q8NA03 581 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 PIGOQ8TEQ8 1089 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 CEP170P1Q96L14 293 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 HDAC6Q9UBN7 1215 aa15.21■□□□□ 0.03
VMP1-210ENST00000589823 COL1A2P08123 1366 aa15.21■□□□□ 0.02
VMP1-210ENST00000589823 KIAA0100Q14667 2235 aaKnown RBP15.2■□□□□ 0.02
VMP1-210ENST00000589823 A0A1B0GVL5 298 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 ARHGEF35A5YM69 484 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 STBD1O95210 358 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 PFKFB1P16118 471 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 STAT6P42226 847 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 ATN1P54259 1190 aaPredicted RBP15.2■□□□□ 0.02
VMP1-210ENST00000589823 IGBP1P78318 339 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 GRIK4Q16099 956 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 MTERF2Q49AM1 385 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 XKR9Q5GH70 373 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 PLA2G4FQ68DD2 849 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 SESTD1Q86VW0 696 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 PIAS4Q8N2W9 510 aaPredicted RBP15.2■□□□□ 0.02
VMP1-210ENST00000589823 PDILTQ8N807 584 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 SLC43A3Q8NBI5 491 aa15.2■□□□□ 0.02
VMP1-210ENST00000589823 PPP1R13LQ8WUF5 828 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms