RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 RARBP10826 455 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 DEKP35659 375 aaKnown RBP11.69□□□□□ -0.54
VPS4B-204ENST00000589604 GJA9P57773 515 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 CUL4BQ13620 913 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 MORC3Q14149 939 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 IQCB1Q15051 598 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 LRRC41Q15345 812 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 ZRSR1Q15695 479 aaKnown RBP11.69□□□□□ -0.54
VPS4B-204ENST00000589604 DPCR1Q3MIW9 517 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 GNPTABQ3T906 1256 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 CELF3Q5SZQ8 465 aaKnown RBP11.69□□□□□ -0.54
VPS4B-204ENST00000589604 LRCH2Q5VUJ6 765 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 NCAPH2Q6IBW4 605 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 CYFIP1Q7L576 1253 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 CATSPER3Q86XQ3 398 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 KLHDC9Q8NEP7 349 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 CALML4Q96GE6 196 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 HSD17B14Q9BPX1 270 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 ZNF577Q9BSK1 485 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 UNC45AQ9H3U1 944 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 CBX8Q9HC52 389 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 ANO10Q9NW15 660 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 STK17AQ9UEE5 414 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 LOXHD1Q8IVV2 1947 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 POTEB3A0JP26 581 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 KLRC4O43908 158 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 FARP2O94887 1054 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 CCNE2O96020 404 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 TGFB3P10600 412 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 RPA1P27694 616 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 CCT6AP40227 531 aaKnown RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 NKX3-2P78367 333 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 HSDL1Q3SXM5 330 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 ISM2Q6H9L7 571 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 POTEBQ6S5H4 581 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 NLRX1Q86UT6 975 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 KCTD17Q8N5Z5 321 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 OR6J1Q8NGC5 347 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 AFG1LQ8WV93 481 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 RAD54LQ92698 747 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 EIF2AK1Q9BQI3 630 aaKnown RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 POLR3CQ9BUI4 534 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 TMEM106CQ9BVX2 250 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 BLZF1Q9H2G9 400 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 MAGEF1Q9HAY2 307 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 HOOK1Q9UJC3 728 aaKnown RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 TNRC18O15417 2968 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 MSCO60682 206 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 GAS7O60861 476 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 GH1P01241 217 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 TFRCP02786 760 aaKnown RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 C6orf222P0C671 652 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 MCM6Q14566 821 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 L1TD1Q5T7N2 865 aaKnown RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 UBE2Q1Q7Z7E8 422 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 DHX37Q8IY37 1157 aaKnown RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 FAM200AQ8TCP9 573 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 PPP1R13LQ8WUF5 828 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 SMARCE1Q969G3 411 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 EMID1Q96A84 441 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 GSDMAQ96QA5 445 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 C7orf25Q9BPX7 421 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 SENP7Q9BQF6 1050 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 RGL1Q9NZL6 768 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 Q9Y3F1 56 aa11.68□□□□□ -0.54
VPS4B-204ENST00000589604 MYH9P35579 1960 aaKnown RBP11.68□□□□□ -0.54
VPS4B-204ENST00000589604 MYMKA6NI61 221 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 A6NJR5 290 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 E9PMD0 336 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 DDX39AO00148 427 aaKnown RBP11.67□□□□□ -0.54
VPS4B-204ENST00000589604 NKRFO15226 690 aaKnown RBP eCLIP11.67□□□□□ -0.54
VPS4B-204ENST00000589604 SLITRK3O94933 977 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 ZNF165P49910 485 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 PSMC6P62333 389 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 SP4Q02446 784 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 KCNA10Q16322 511 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 FSCN1Q16658 493 aaKnown RBP11.67□□□□□ -0.54
VPS4B-204ENST00000589604 CNNM4Q6P4Q7 775 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 KCNV1Q6PIU1 500 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 POTEGQ6S5H5 508 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 DHX40Q8IX18 779 aaKnown RBP11.67□□□□□ -0.54
VPS4B-204ENST00000589604 TRIML1Q8N9V2 468 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 LARP4BQ92615 738 aaKnown RBP11.67□□□□□ -0.54
VPS4B-204ENST00000589604 TEKT3Q9BXF9 490 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 TRIM9Q9C026 710 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 WRAP73Q9P2S5 460 aaPredicted RBP11.67□□□□□ -0.54
VPS4B-204ENST00000589604 KIAA1024Q9UPX6 916 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 KDM3AQ9Y4C1 1321 aa11.67□□□□□ -0.54
VPS4B-204ENST00000589604 GSTTP1A0A1W2PQM5 241 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 MAFGO15525 162 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 SMC2O95347 1197 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 CAVIN2O95810 425 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 MYL1P05976 194 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 MMP3P08254 477 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 CST5P28325 142 aaPredicted RBP11.66□□□□□ -0.54
VPS4B-204ENST00000589604 EPHA7Q15375 998 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 UVSSAQ2YD98 709 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 GNASQ5JWF2 1037 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 METTL7BQ6UX53 244 aa11.66□□□□□ -0.54
VPS4B-204ENST00000589604 LUZP1Q86V48 1076 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms