RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	ZNF302	Q9NR11	478 aa		11.17	□□□□□ -0.62
PTPN2-208	ENST00000589216	TBC1D22B	Q9NU19	505 aa		11.17	□□□□□ -0.62
PTPN2-208	ENST00000589216	MTMR10	Q9NXD2	777 aa		11.17	□□□□□ -0.62
PTPN2-208	ENST00000589216	DDX25	Q9UHL0	483 aa	Known RBP	11.17	□□□□□ -0.62
PTPN2-208	ENST00000589216	EYS	Q5T1H1	3165 aa		11.17	□□□□□ -0.62
PTPN2-208	ENST00000589216	MYO9B	Q13459	2157 aa		11.17	□□□□□ -0.62
PTPN2-208	ENST00000589216	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	POTEB3	A0JP26	581 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	TMEM150B	A6NC51	233 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	WDR64	B1ANS9	1081 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	RSPH10B2	B2RC85	870 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	RSPH10B	P0C881	870 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	XBP1	P17861	261 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	WDR5	P61964	334 aa	Known RBP	11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	MGAT3	Q09327	533 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	ZNF697	Q5TEC3	545 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	MIS18BP1	Q6P0N0	1132 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	POTEB	Q6S5H4	581 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	TRMT1L	Q7Z2T5	733 aa	Known RBP	11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	SPRED2	Q7Z698	418 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	RPUSD2	Q8IZ73	545 aa	Known RBP	11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	ATP8B4	Q8TF62	1192 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	DNAJB3	Q8WWF6	145 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	RIT2	Q99578	217 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	TEKT3	Q9BXF9	490 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	KCNMB3	Q9NPA1	279 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	DISC1	Q9NRI5	854 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	GABBR1	Q9UBS5	961 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	VAV3	Q9UKW4	847 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	MAFB	Q9Y5Q3	323 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	SLC4A7	Q9Y6M7	1214 aa		11.16	□□□□□ -0.62
PTPN2-208	ENST00000589216	KIF28P	B7ZC32	967 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	EML1	O00423	815 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	CAND2	O75155	1236 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	C22orf31	O95567	290 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	CHRNA1	P02708	482 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	PSAP	P07602	524 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	GHR	P10912	638 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	GNAT1	P11488	350 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	ATP2A2	P16615	1042 aa	Known RBP	11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	PRKCE	Q02156	737 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	TMEM62	Q0P6H9	643 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	FAM26D	Q5JW98	314 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	FAM160B1	Q5W0V3	765 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	CNKSR3	Q6P9H4	555 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	SMAP1	Q8IYB5	467 aa	Predicted RBP	11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	DBF4B	Q8NFT6	615 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	HAS1	Q92839	578 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	TIFA	Q96CG3	184 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	LLPH	Q9BRT6	129 aa	Known RBP	11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	MTIF3	Q9H2K0	278 aa	Known RBP	11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	NKX2-4	Q9H2Z4	354 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	UPF2	Q9HAU5	1272 aa	Known RBP	11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	SAMM50	Q9Y512	469 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	PCDHA10	Q9Y5I2	948 aa		11.15	□□□□□ -0.62
PTPN2-208	ENST00000589216	NLRC5	Q86WI3	1866 aa		11.15	□□□□□ -0.63
PTPN2-208	ENST00000589216	KIAA1671	Q9BY89	1806 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	CCNT1	O60563	726 aa	Known RBP	11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	BAIAP3	O94812	1187 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	ACTN1	P12814	892 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	GCFC2	P16383	781 aa	Known RBP	11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	SLC26A2	P50443	739 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	MRPS6	P82932	125 aa	Known RBP	11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	SPIRE1	Q08AE8	756 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	LPIN1	Q14693	890 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	PLEKHG4	Q58EX7	1191 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	PPP4R3A	Q6IN85	833 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	TAF2	Q6P1X5	1199 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	MTHFD1L	Q6UB35	978 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	MIER3	Q7Z3K6	550 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	RPAIN	Q86UA6	219 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	CKAP2L	Q8IYA6	745 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	TMX3	Q96JJ7	454 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	C8orf76	Q96K31	380 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	BACH2	Q9BYV9	841 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	WRAP73	Q9P2S5	460 aa	Predicted RBP	11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	TCEAL9	Q9UHQ7	104 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	CDY2A	Q9Y6F7	541 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	COL1A2	P08123	1366 aa		11.14	□□□□□ -0.63
PTPN2-208	ENST00000589216	REV3L	O60673	3130 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	ATG2A	Q2TAZ0	1938 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	LCHN	A4D1U4	455 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	RRN3P2	A6NIE6	340 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	ST18	O60284	1047 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	HBP1	O60381	514 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	STBD1	O95210	358 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	OAT	P04181	439 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	CA3	P07451	260 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	KLRC1	P26715	233 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	JAK3	P52333	1124 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	TRIM29	Q14134	588 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	GRIN2C	Q14957	1233 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	HERC6	Q8IVU3	1022 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	BANK1	Q8NDB2	785 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	LINC01599	Q8WXQ3	324 aa		11.13	□□□□□ -0.63
PTPN2-208	ENST00000589216	MYLIP	Q8WY64	445 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms