RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 RBBP6Q7Z6E9 1792 aaKnown RBP6.04□□□□□ -1.44
LIG3-210ENST00000588109 KIF28PB7ZC32 967 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 TGFBR3LH3BV60 316 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 NFIBO00712 420 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 ATP2A1O14983 1001 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 SLC25A27O95847 323 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 ERCC3P19447 782 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 ATP2B1P20020 1258 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 BRD2P25440 801 aaKnown RBP6.04□□□□□ -1.44
LIG3-210ENST00000588109 U2AF2P26368 475 aaKnown RBP eCLIP6.04□□□□□ -1.44
LIG3-210ENST00000588109 TM4SF4P48230 202 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 ERVK-24P63145 666 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 RESTQ13127 1097 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 AP3B2Q13367 1082 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 NONOQ15233 471 aaKnown RBP eCLIP6.04□□□□□ -1.44
LIG3-210ENST00000588109 MUM1L1Q5H9M0 696 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 MCTP2Q6DN12 878 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 USP17L6PQ6QN14 398 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 RNF207Q6ZRF8 634 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 KRT25Q7Z3Z0 450 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 FCHSD1Q86WN1 690 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 RIOX2Q8IUF8 465 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 ANKRD35Q8N283 1001 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 CHST13Q8NET6 341 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 TNPO1Q92973 898 aaKnown RBP6.04□□□□□ -1.44
LIG3-210ENST00000588109 MYO19Q96H55 970 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 ZNF396Q96N95 335 aaPredicted RBP6.04□□□□□ -1.44
LIG3-210ENST00000588109 GBP4Q96PP9 640 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 MOV10L1Q9BXT6 1211 aaKnown RBP6.04□□□□□ -1.44
LIG3-210ENST00000588109 OXCT2Q9BYC2 517 aaPredicted RBP6.04□□□□□ -1.44
LIG3-210ENST00000588109 MROH8Q9H579 483 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 EHMT1Q9H9B1 1298 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 TXNRD2Q9NNW7 524 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 TMEM260Q9NX78 707 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 FBXO40Q9UH90 709 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 CPA4Q9UI42 421 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 GDF2Q9UK05 429 aaPredicted RBP6.04□□□□□ -1.44
LIG3-210ENST00000588109 PCDHA6Q9UN73 950 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 USTQ9Y2C2 406 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 ZDHHC9Q9Y397 364 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 RIPK3Q9Y572 518 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 PCDHA8Q9Y5H6 950 aa6.04□□□□□ -1.44
LIG3-210ENST00000588109 MEIS2O14770 477 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 ADAMTS3O15072 1205 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 TLR2O60603 784 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 CNMDO75829 334 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 FOSP01100 380 aaPredicted RBP6.03□□□□□ -1.44
LIG3-210ENST00000588109 BCRP11274 1271 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 HSPA6P17066 643 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 MAP2K2P36507 400 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 C1QTNF8P60827 252 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 KRT85P78386 507 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 CEBPZQ03701 1054 aaKnown RBP6.03□□□□□ -1.44
LIG3-210ENST00000588109 DNM1Q05193 864 aaKnown RBP6.03□□□□□ -1.44
LIG3-210ENST00000588109 SFSWAPQ12872 951 aaKnown RBP6.03□□□□□ -1.44
LIG3-210ENST00000588109 CRHR2Q13324 411 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 BAATQ14032 418 aaPredicted RBP6.03□□□□□ -1.44
LIG3-210ENST00000588109 KCTD2Q14681 263 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 NPY5RQ15761 445 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 FAM110CQ1W6H9 321 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 INF2Q27J81 1249 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 RILPL1Q5EBL4 403 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 COX20Q5RI15 118 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 IER5Q5VY09 327 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 FAM173BQ6P4H8 233 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 SLC30A10Q6XR72 485 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 TEX2Q8IWB9 1127 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 GOLGA6L1Q8N7Z2 621 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 SHCBP1Q8NEM2 672 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 CLEC4DQ8WXI8 215 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 TBC1D5Q92609 795 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 PGBD1Q96JS3 809 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 MMP19Q99542 508 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 ANO3Q9BYT9 981 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 MAP3K20Q9NYL2 800 aaKnown RBP6.03□□□□□ -1.44
LIG3-210ENST00000588109 MORF4L1Q9UBU8 362 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 CFAP45Q9UL16 551 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 IVNS1ABPQ9Y6Y0 642 aa6.03□□□□□ -1.44
LIG3-210ENST00000588109 PFASO15067 1338 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 GOLGA6L22H0YM25 854 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 OPLAHO14841 1288 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 EFSO43281 561 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 FIBPO43427 364 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 CA12O43570 354 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 CCNT1O60563 726 aaKnown RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 MICAL2O94851 1124 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 CELA2BP08218 269 aaPredicted RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 FCER1AP12319 257 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 MAPK4P31152 587 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 ZNF76P36508 570 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 TRAPPC10P48553 1259 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 HSD17B4P51659 736 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 MARSP56192 900 aaKnown RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 RPS6P62753 249 aaKnown RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 UBXN2AP68543 259 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 STK38Q15208 465 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 SF3A1Q15459 793 aaKnown RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 LETM2Q2VYF4 491 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 NOM1Q5C9Z4 860 aaKnown RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 EARS2Q5JPH6 523 aaKnown RBP6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms