RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CDC14BO60729 498 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 LRG1P02750 347 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 AMPD2Q01433 879 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 SQSTM1Q13501 440 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 USP10Q14694 798 aaKnown RBP5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 SMAD2Q15796 467 aaKnown RBP5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 RNF187Q5TA31 235 aaPredicted RBP5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 RIOX2Q8IUF8 465 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 TRIM59Q8IWR1 403 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 ARHGEF39Q8N4T4 335 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 ZNF513Q8N8E2 541 aaPredicted RBP5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 ARRDC4Q8NCT1 418 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 TLR9Q9NR96 1032 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 CLEC1BQ9P126 229 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 APEX2Q9UBZ4 518 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 CGGBP1Q9UFW8 167 aaPredicted RBP5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 WASF3Q9UPY6 502 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 AKT3Q9Y243 479 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 EMC9Q9Y3B6 208 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 PRKAB1Q9Y478 270 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 PEX11BO96011 259 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 CHGBP05060 677 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 ITGAVP06756 1048 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 FAM153BP0C7A2 387 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 FGFR1P11362 822 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 PPP2R2AP63151 447 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 MBLAC2Q68D91 279 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 KIAA0907Q7Z7F0 614 aaPredicted RBP5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 REXO1L1PQ8IX06 675 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 MRGPRX3Q96LB0 322 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 CCDC140Q96MF4 163 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 PUS7Q96PZ0 661 aaKnown RBP5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 CDC6Q99741 560 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 ARHGEF4Q9NR80 690 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 PLAAQ9Y263 795 aa5.37□□□□□ -1.55
SMCHD1-209ENST00000583441 HGSO14964 777 aaPredicted RBP5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 FBXO21O94952 628 aa5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 PROZP22891 400 aa5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 SUMO1P63165 101 aaKnown RBP5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 CHRNA2Q15822 529 aa5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 PHF19Q5T6S3 580 aa5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 MMP19Q99542 508 aa5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 DPYSL5Q9BPU6 564 aa5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 PTPN22Q9Y2R2 807 aa5.36□□□□□ -1.55
SMCHD1-209ENST00000583441 SBNO2Q9Y2G9 1366 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 TRBV23-1A0A0A0MS06 115 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 PPP1R12AO14974 1030 aaPredicted RBP5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 FPR2P25090 351 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 MICALCLQ6ZW33 695 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 TMPRSS6Q8IU80 811 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 DHRS4Q9BTZ2 278 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 PLA2G12BQ9BX93 195 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 C12orf65Q9H3J6 166 aaKnown RBP5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 KANSL2Q9H9L4 492 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 GIT1Q9Y2X7 761 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 PCDHB4Q9Y5E5 795 aa5.35□□□□□ -1.55
SMCHD1-209ENST00000583441 TCRBV5S2A0A599 114 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 KCNH1O95259 989 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 ASMTLO95671 621 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 CPP00450 1065 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 KNG1P01042 644 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 ZNF888P0CJ79 500 aaPredicted RBP5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 PABPC1P11940 636 aaKnown RBP5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 PLS3P13797 630 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 HOXC12P31275 282 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 RPS19P39019 145 aaKnown RBP5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 HHEXQ03014 270 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 MAP4K2Q12851 820 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 GTF2IRD2BQ6EKJ0 949 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 NSMFQ6X4W1 530 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 CEP68Q76N32 757 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 GTF2IRD2Q86UP8 949 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 SGMS1Q86VZ5 419 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 ZCRB1Q8TBF4 217 aaKnown RBP5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 KCTD13Q8WZ19 329 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 TRMT2BQ96GJ1 504 aaKnown RBP5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 MRPL4Q9BYD3 311 aaKnown RBP5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 KATNBL1Q9H079 304 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 RBPJLQ9UBG7 517 aa5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 MRPS23Q9Y3D9 190 aaKnown RBP5.34□□□□□ -1.55
SMCHD1-209ENST00000583441 ZAR1LA6NP61 321 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 PLD2O14939 933 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 RFPL3O75679 317 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 CAPNS1P04632 268 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 APPP05067 770 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 HSP90B1P14625 803 aaKnown RBP5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 RNF151Q2KHN1 245 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 FNDC3BQ53EP0 1204 aaKnown RBP5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 VASNQ6EMK4 673 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 ADGRG3Q86Y34 549 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 BTN2A2Q8WVV5 523 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 EXOC2Q96KP1 924 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 BBC3Q96PG8 261 aaPredicted RBP5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 CARD11Q9BXL7 1154 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 BRINP2Q9C0B6 783 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 NKX2-4Q9H2Z4 354 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 CYP26B1Q9NR63 512 aa5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 COA3Q9Y2R0 106 aaPredicted RBP5.33□□□□□ -1.56
SMCHD1-209ENST00000583441 PRODHO43272 600 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms