RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 KIAA2012Q0VF49 1180 aa9.12□□□□□ -0.95
SS18-214ENST00000580003 KIF18BQ86Y91 864 aa9.12□□□□□ -0.95
SS18-214ENST00000580003 ASB15Q8WXK1 588 aa9.12□□□□□ -0.95
SS18-214ENST00000580003 TARS2Q9BW92 718 aaKnown RBP9.12□□□□□ -0.95
SS18-214ENST00000580003 KCND1Q9NSA2 647 aa9.12□□□□□ -0.95
SS18-214ENST00000580003 IFT57Q9NWB7 429 aa9.12□□□□□ -0.95
SS18-214ENST00000580003 BTBD7Q9P203 1132 aa9.12□□□□□ -0.95
SS18-214ENST00000580003 OTOL1A6NHN0 477 aaPredicted RBP9.11□□□□□ -0.95
SS18-214ENST00000580003 LCORQ96JN0 433 aaPredicted RBP9.11□□□□□ -0.95
SS18-214ENST00000580003 YTHDC1Q96MU7 727 aaKnown RBP9.11□□□□□ -0.95
SS18-214ENST00000580003 ORAI3Q9BRQ5 295 aa9.11□□□□□ -0.95
SS18-214ENST00000580003 XYLT2Q9H1B5 865 aa9.11□□□□□ -0.95
SS18-214ENST00000580003 ACSS2Q9NR19 701 aa9.11□□□□□ -0.95
SS18-214ENST00000580003 UCKL1Q9NWZ5 548 aa9.11□□□□□ -0.95
SS18-214ENST00000580003 GALNT8Q9NY28 637 aa9.11□□□□□ -0.95
SS18-214ENST00000580003 ASB1Q9Y576 335 aa9.11□□□□□ -0.95
SS18-214ENST00000580003 ADAMTS20P59510 1910 aa9.1□□□□□ -0.95
SS18-214ENST00000580003 MROH6A6NGR9 719 aa9.1□□□□□ -0.95
SS18-214ENST00000580003 C9orf118A6NHY6 69 aa9.1□□□□□ -0.95
SS18-214ENST00000580003 H0Y858 1186 aa9.1□□□□□ -0.95
SS18-214ENST00000580003 NOBOXO60393 691 aa9.1□□□□□ -0.95
SS18-214ENST00000580003 IL18BPO95998 194 aa9.1□□□□□ -0.95
SS18-214ENST00000580003 MYCLP1P12525 358 aaPredicted RBP9.1□□□□□ -0.95
SS18-214ENST00000580003 MC4RP32245 332 aa9.1□□□□□ -0.95
SS18-214ENST00000580003 TTLL10Q6ZVT0 673 aa9.1□□□□□ -0.95
SS18-214ENST00000580003 ERCC4Q92889 916 aaPredicted RBP9.1□□□□□ -0.95
SS18-214ENST00000580003 MTFR1LQ9H019 292 aa9.1□□□□□ -0.95
SS18-214ENST00000580003 PRAMEF22A3QJZ6 481 aa9.09□□□□□ -0.95
SS18-214ENST00000580003 KNG1P01042 644 aa9.09□□□□□ -0.95
SS18-214ENST00000580003 COL6A1P12109 1028 aa9.09□□□□□ -0.95
SS18-214ENST00000580003 HOXA5P20719 270 aa9.09□□□□□ -0.95
SS18-214ENST00000580003 SART3Q15020 963 aaKnown RBP9.09□□□□□ -0.95
SS18-214ENST00000580003 CATSPEREQ5SY80 951 aa9.09□□□□□ -0.95
SS18-214ENST00000580003 BORAQ6PGQ7 559 aa9.09□□□□□ -0.95
SS18-214ENST00000580003 KIAA1958Q8N8K9 716 aa9.09□□□□□ -0.95
SS18-214ENST00000580003 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.09□□□□□ -0.95
SS18-214ENST00000580003 BARX1Q9HBU1 254 aaPredicted RBP9.09□□□□□ -0.95
SS18-214ENST00000580003 FAM83GA6ND36 823 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 RASSF10A6NK89 507 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 F2P00734 622 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 CYP17A1P05093 508 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 FNTBP49356 437 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 SCNN1BP51168 640 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 PCBP1Q15365 356 aaKnown RBP eCLIP9.08□□□□□ -0.96
SS18-214ENST00000580003 WDR72Q3MJ13 1102 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 FRMD5Q7Z6J6 570 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 CALML6Q8TD86 181 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 E2F7Q96AV8 911 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 RAPGEFL1Q9UHV5 662 aa9.08□□□□□ -0.96
SS18-214ENST00000580003 DVL2O14641 736 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 PDE8AO60658 829 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 MPIG6BO95866 241 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 ECE1P42892 770 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 NXPE1Q8N323 547 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 KLHL36Q8N4N3 616 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 NUDT10Q8NFP7 164 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 NUDT11Q96G61 164 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 BTBD2Q9BX70 525 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 MAPRE3Q9UPY8 281 aa9.07□□□□□ -0.96
SS18-214ENST00000580003 A0A087X0B3 334 aa9.06□□□□□ -0.96
SS18-214ENST00000580003 GSG1L2A8MUP6 293 aa9.06□□□□□ -0.96
SS18-214ENST00000580003 GOLGA6L22H0YM25 854 aa9.06□□□□□ -0.96
SS18-214ENST00000580003 KLHL18O94889 574 aa9.06□□□□□ -0.96
SS18-214ENST00000580003 ATP2A2P16615 1042 aaKnown RBP9.06□□□□□ -0.96
SS18-214ENST00000580003 NFATC3Q12968 1075 aa9.06□□□□□ -0.96
SS18-214ENST00000580003 CXXC5Q7LFL8 322 aaKnown RBP9.06□□□□□ -0.96
SS18-214ENST00000580003 OR2W6PQ8NHA6 318 aa9.06□□□□□ -0.96
SS18-214ENST00000580003 LEO1Q8WVC0 666 aaPredicted RBP9.06□□□□□ -0.96
SS18-214ENST00000580003 AMNQ9BXJ7 453 aa9.06□□□□□ -0.96
SS18-214ENST00000580003 OXSMQ9NWU1 459 aa9.06□□□□□ -0.96
SS18-214ENST00000580003 ZNF891A8MT65 544 aaPredicted RBP9.05□□□□□ -0.96
SS18-214ENST00000580003 SLC9A1P19634 815 aa9.05□□□□□ -0.96
SS18-214ENST00000580003 IL13RA1P78552 427 aa9.05□□□□□ -0.96
SS18-214ENST00000580003 DSG1Q02413 1049 aa9.05□□□□□ -0.96
SS18-214ENST00000580003 Q6ZUG5 572 aa9.05□□□□□ -0.96
SS18-214ENST00000580003 PASD1Q8IV76 773 aa9.05□□□□□ -0.96
SS18-214ENST00000580003 LGI4Q8N135 537 aa9.05□□□□□ -0.96
SS18-214ENST00000580003 THG1LQ9NWX6 298 aaKnown RBP9.05□□□□□ -0.96
SS18-214ENST00000580003 ZDHHC9Q9Y397 364 aa9.05□□□□□ -0.96
SS18-214ENST00000580003 SPO11Q9Y5K1 396 aa9.05□□□□□ -0.96
SS18-214ENST00000580003 OCRLQ01968 901 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 SKOR2Q2VWA4 1001 aaPredicted RBP9.04□□□□□ -0.96
SS18-214ENST00000580003 UBXN11Q5T124 520 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 LRSAM1Q6UWE0 723 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 NME9Q86XW9 330 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 CHTF18Q8WVB6 975 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 TEPSINQ96N21 525 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 ELF4Q99607 663 aaPredicted RBP9.04□□□□□ -0.96
SS18-214ENST00000580003 OR10A5Q9H207 317 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 ADAM7Q9H2U9 754 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 TOMM22Q9NS69 142 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 FBXO10Q9UK96 956 aa9.04□□□□□ -0.96
SS18-214ENST00000580003 CUTAO60888 179 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 POLD1P28340 1107 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 CNR2P34972 360 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 KPNA1P52294 538 aaPredicted RBP9.03□□□□□ -0.96
SS18-214ENST00000580003 CTSWP56202 376 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 NFIXQ14938 502 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 STILQ15468 1287 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 SEPT7Q16181 437 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms