RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 OTUD6AQ7L8S5 288 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 KCNK18Q7Z418 384 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 CTU1Q7Z7A3 348 aaKnown RBP11.99□□□□□ -0.49
SS18-213ENST00000579640 LRRC15Q8TF66 581 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 AFG1LQ8WV93 481 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 FAM167AQ96KS9 214 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 SMARCAD1Q9H4L7 1026 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 SPC25Q9HBM1 224 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 WRAP73Q9P2S5 460 aaPredicted RBP11.99□□□□□ -0.49
SS18-213ENST00000579640 TELO2Q9Y4R8 837 aa11.99□□□□□ -0.49
SS18-213ENST00000579640 MYH9P35579 1960 aaKnown RBP11.99□□□□□ -0.49
SS18-213ENST00000579640 GTPBP6O43824 516 aaPredicted RBP11.98□□□□□ -0.49
SS18-213ENST00000579640 YWHABP31946 246 aaKnown RBP11.98□□□□□ -0.49
SS18-213ENST00000579640 GJA9P57773 515 aa11.98□□□□□ -0.49
SS18-213ENST00000579640 NKX3-2P78367 333 aa11.98□□□□□ -0.49
SS18-213ENST00000579640 MDM2Q00987 491 aaPredicted RBP11.98□□□□□ -0.49
SS18-213ENST00000579640 MCM6Q14566 821 aa11.98□□□□□ -0.49
SS18-213ENST00000579640 CAMK4Q16566 473 aa11.98□□□□□ -0.49
SS18-213ENST00000579640 XKR3Q5GH77 459 aa11.98□□□□□ -0.49
SS18-213ENST00000579640 RBM43Q6ZSC3 357 aaKnown RBP11.98□□□□□ -0.49
SS18-213ENST00000579640 SYT2Q8N9I0 419 aaPredicted RBP11.98□□□□□ -0.49
SS18-213ENST00000579640 GLG1Q92896 1179 aa11.98□□□□□ -0.49
SS18-213ENST00000579640 PCYT2Q99447 389 aa11.98□□□□□ -0.49
SS18-213ENST00000579640 UPF3AQ9H1J1 476 aaKnown RBP11.98□□□□□ -0.49
SS18-213ENST00000579640 BMP2KQ9NSY1 1161 aaPredicted RBP11.98□□□□□ -0.49
SS18-213ENST00000579640 KCND2Q9NZV8 630 aa11.98□□□□□ -0.49
SS18-213ENST00000579640 ZNF862O60290 1169 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 SMC2O95347 1197 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 OATP04181 439 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 LGALS2P05162 132 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 CCND3P30281 292 aaPredicted RBP11.97□□□□□ -0.49
SS18-213ENST00000579640 AFMP43652 599 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 SLC12A3P55017 1021 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 PSMC6P62333 389 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 PRKCEQ02156 737 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 PKN2Q16513 984 aaKnown RBP11.97□□□□□ -0.49
SS18-213ENST00000579640 UTP14CQ5TAP6 766 aaKnown RBP11.97□□□□□ -0.49
SS18-213ENST00000579640 CNNM4Q6P4Q7 775 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 PIAS4Q8N2W9 510 aaPredicted RBP11.97□□□□□ -0.49
SS18-213ENST00000579640 CCDC43Q96MW1 224 aaKnown RBP11.97□□□□□ -0.49
SS18-213ENST00000579640 C7orf25Q9BPX7 421 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 BHMT2Q9H2M3 363 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 HMX1Q9NP08 348 aaPredicted RBP11.97□□□□□ -0.49
SS18-213ENST00000579640 NRBP2Q9NSY0 501 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 ERAP1Q9NZ08 941 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 DDX20Q9UHI6 824 aaKnown RBP11.97□□□□□ -0.49
SS18-213ENST00000579640 ZNF215Q9UL58 517 aaPredicted RBP11.97□□□□□ -0.49
SS18-213ENST00000579640 PPME1Q9Y570 386 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 ARHGEF35A5YM69 484 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 KPNA6O60684 536 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 SSBP05455 408 aaKnown RBP eCLIP11.97□□□□□ -0.49
SS18-213ENST00000579640 CKAP2LQ8IYA6 745 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 PIGOQ8TEQ8 1089 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 BBXQ8WY36 941 aaPredicted RBP11.97□□□□□ -0.49
SS18-213ENST00000579640 MTRQ99707 1265 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 KIAA1468Q9P260 1216 aa11.97□□□□□ -0.49
SS18-213ENST00000579640 ZEB2O60315 1214 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 STBD1O95210 358 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 ATP4AP20648 1035 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 PTGS1P23219 599 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 RARRES1P49788 294 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 LBX1P52954 281 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 DPYDQ12882 1025 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 PNOCQ13519 176 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 FSCN1Q16658 493 aaKnown RBP11.96□□□□□ -0.49
SS18-213ENST00000579640 ZSCAN23Q3MJ62 389 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 FBXO46Q6PJ61 603 aaPredicted RBP11.96□□□□□ -0.49
SS18-213ENST00000579640 ANO5Q75V66 913 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 GPBP1Q86WP2 473 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 ATP8B4Q8TF62 1192 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 LENG1Q96BZ8 264 aaPredicted RBP11.96□□□□□ -0.49
SS18-213ENST00000579640 NIFKQ9BYG3 293 aaKnown RBP11.96□□□□□ -0.49
SS18-213ENST00000579640 TRIM9Q9C026 710 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 SEPT9Q9UHD8 586 aaPredicted RBP11.96□□□□□ -0.49
SS18-213ENST00000579640 SYNRGQ9UMZ2 1314 aa11.96□□□□□ -0.49
SS18-213ENST00000579640 C6orf222P0C671 652 aaPredicted RBP11.95□□□□□ -0.5
SS18-213ENST00000579640 CYP11B2P19099 503 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 CST5P28325 142 aaPredicted RBP11.95□□□□□ -0.5
SS18-213ENST00000579640 DHX8Q14562 1220 aaKnown RBP11.95□□□□□ -0.5
SS18-213ENST00000579640 SLC9C1Q4G0N8 1177 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 XKR9Q5GH70 373 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 NT5DC1Q5TFE4 455 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 GRAMD1CQ8IYS0 662 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 SPATA20Q8TB22 786 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 STAMQ92783 540 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 SMARCE1Q969G3 411 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 CCDC47Q96A33 483 aaKnown RBP11.95□□□□□ -0.5
SS18-213ENST00000579640 GSDMAQ96QA5 445 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 C16orf70Q9BSU1 422 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 TIPINQ9BVW5 301 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 XPNPEP3Q9NQH7 507 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 TUBE1Q9UJT0 475 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 A0A087WWV3 80 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 PVALEFA0A1B0GWK0 134 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 MYMKA6NI61 221 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 H3BRB1 525 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 ZBTB39O15060 712 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 HBP1O60381 514 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 ADAMTS4O75173 837 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 KRT18P05783 430 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms