RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 GCFC2P16383 781 aaKnown RBP16.78■□□□□ 0.28
SS18-212ENST00000579061 SFNP31947 248 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 RABGGTBP53611 331 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 IGBP1P78318 339 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 GRIN2CQ14957 1233 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 ZNF484Q5JVG2 852 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 LRCH2Q5VUJ6 765 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 NEK8Q86SG6 692 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 BBXQ8WY36 941 aaPredicted RBP16.78■□□□□ 0.28
SS18-212ENST00000579061 SEPT8Q92599 483 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 APBB2Q92870 758 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 UIMC1Q96RL1 719 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 NAP1L4Q99733 375 aaKnown RBP16.78■□□□□ 0.28
SS18-212ENST00000579061 LLPHQ9BRT6 129 aaKnown RBP16.78■□□□□ 0.28
SS18-212ENST00000579061 NKX2-4Q9H2Z4 354 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 DISC1Q9NRI5 854 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 GJB4Q9NTQ9 266 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 LOXHD1Q8IVV2 1947 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 SMIM35A0A1B0GVV1 85 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 ATP4AP20648 1035 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 KRT2P35908 639 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 JAK3P52333 1124 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 MGAT3Q09327 533 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 ST3GAL1Q11201 340 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 MKRN4PQ13434 485 aaPredicted RBP16.77■□□□□ 0.28
SS18-212ENST00000579061 TCTN1Q2MV58 587 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 PPP4R3AQ6IN85 833 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 NME8Q8N427 588 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 ETNPPLQ8TBG4 499 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 OXER1Q8TDS5 423 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 DNAJB3Q8WWF6 145 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 FAM167AQ96KS9 214 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 SH2B1Q9NRF2 756 aaPredicted RBP16.77■□□□□ 0.28
SS18-212ENST00000579061 DDX25Q9UHL0 483 aaKnown RBP16.77■□□□□ 0.28
SS18-212ENST00000579061 SAMM50Q9Y512 469 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 SQORQ9Y6N5 450 aa16.77■□□□□ 0.28
SS18-212ENST00000579061 IGSF9BQ9UPX0 1349 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 JAK2O60674 1132 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 MRPS6P82932 125 aaKnown RBP16.76■□□□□ 0.27
SS18-212ENST00000579061 LETM2Q2VYF4 491 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 IER5Q5VY09 327 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 MTHFD1LQ6UB35 978 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 B3GNT9Q6UX72 402 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 PIK3AP1Q6ZUJ8 805 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 TRAPPC12Q8WVT3 735 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 MYLIPQ8WY64 445 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 FAM20AQ96MK3 541 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 UNC45AQ9H3U1 944 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 GABBR1Q9UBS5 961 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 CEP131Q9UPN4 1083 aa16.76■□□□□ 0.27
SS18-212ENST00000579061 KDM3AQ9Y4C1 1321 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 CDH23Q9H251 3354 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 TBX3O15119 743 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 DTNBO60941 627 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 GJB5O95377 273 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 MMP1P03956 469 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 MYOGP15173 224 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 KLRC1P26715 233 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 DEFB103AP81534 67 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 TRIM29Q14134 588 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 RABEP1Q15276 862 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 PPP2R2DQ66LE6 453 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 FAM43BQ6ZT52 329 aaPredicted RBP16.75■□□□□ 0.27
SS18-212ENST00000579061 MIER3Q7Z3K6 550 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 CKAP2LQ8IYA6 745 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 USP38Q8NB14 1042 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 TNFRSF25Q93038 417 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 IFIH1Q9BYX4 1025 aaKnown RBP16.75■□□□□ 0.27
SS18-212ENST00000579061 OSBPL7Q9BZF2 842 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 UPF2Q9HAU5 1272 aaKnown RBP16.75■□□□□ 0.27
SS18-212ENST00000579061 KCNMB3Q9NPA1 279 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 CDY2AQ9Y6F7 541 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 CHD7Q9P2D1 2997 aa16.75■□□□□ 0.27
SS18-212ENST00000579061 ZBTB42B2RXF5 422 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 M0QZ92 97 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 TLL1O43897 1013 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 AMHP03971 560 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 CA3P07451 260 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 FOSL2P15408 326 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 HMGN5P82970 282 aaKnown RBP16.74■□□□□ 0.27
SS18-212ENST00000579061 FBXO47Q5MNV8 452 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 KRT40Q6A162 431 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 CCDC83Q8IWF9 413 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 GAS2L1Q99501 681 aaPredicted RBP16.74■□□□□ 0.27
SS18-212ENST00000579061 RAD9AQ99638 391 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 ZBED2Q9BTP6 218 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 FAM49AQ9H0Q0 323 aaPredicted RBP16.74■□□□□ 0.27
SS18-212ENST00000579061 NRBP2Q9NSY0 501 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 TRPV2Q9Y5S1 764 aa16.74■□□□□ 0.27
SS18-212ENST00000579061 MAGEB2O15479 319 aa16.73■□□□□ 0.27
SS18-212ENST00000579061 SLC37A4O43826 429 aa16.73■□□□□ 0.27
SS18-212ENST00000579061 ZNF862O60290 1169 aa16.73■□□□□ 0.27
SS18-212ENST00000579061 GHRP10912 638 aa16.73■□□□□ 0.27
SS18-212ENST00000579061 NR5A1Q13285 461 aa16.73■□□□□ 0.27
SS18-212ENST00000579061 LPIN1Q14693 890 aa16.73■□□□□ 0.27
SS18-212ENST00000579061 EARS2Q5JPH6 523 aaKnown RBP16.73■□□□□ 0.27
SS18-212ENST00000579061 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.73■□□□□ 0.27
SS18-212ENST00000579061 TSHZ1Q6ZSZ6 1077 aa16.73■□□□□ 0.27
SS18-212ENST00000579061 GJA10Q969M2 543 aa16.73■□□□□ 0.27
SS18-212ENST00000579061 ZBTB10Q96DT7 871 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms