RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 AFG1LQ8WV93 481 aa18.02■□□□□ 0.48
SS18-211ENST00000578954 C7orf25Q9BPX7 421 aa18.02■□□□□ 0.48
SS18-211ENST00000578954 LRRC27Q9C0I9 530 aa18.02■□□□□ 0.48
SS18-211ENST00000578954 UPF3AQ9H1J1 476 aaKnown RBP18.02■□□□□ 0.48
SS18-211ENST00000578954 ANKEF1Q9NU02 776 aa18.02■□□□□ 0.48
SS18-211ENST00000578954 KIAA1468Q9P260 1216 aa18.02■□□□□ 0.48
SS18-211ENST00000578954 PTCH2Q9Y6C5 1203 aa18.02■□□□□ 0.48
SS18-211ENST00000578954 PCNTO95613 3336 aa18.02■□□□□ 0.48
SS18-211ENST00000578954 MYH9P35579 1960 aaKnown RBP18.01■□□□□ 0.47
SS18-211ENST00000578954 BACH1O14867 736 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 PPFIA4O75335 1185 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 MMP3P08254 477 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 PRR29P0C7W0 189 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 ATP4AP20648 1035 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 YWHABP31946 246 aaKnown RBP18.01■□□□□ 0.47
SS18-211ENST00000578954 GRK4P32298 578 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 SARSP49591 514 aaKnown RBP18.01■□□□□ 0.47
SS18-211ENST00000578954 SLC26A2P50443 739 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 STAT5BP51692 787 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 AMPD3Q01432 767 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 PNOCQ13519 176 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 ANP32EQ9BTT0 268 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 TRIM9Q9C026 710 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 PTPN22Q9Y2R2 807 aa18.01■□□□□ 0.47
SS18-211ENST00000578954 DYNC1LI2O43237 492 aaPredicted RBP18■□□□□ 0.47
SS18-211ENST00000578954 CYP11B2P19099 503 aa18■□□□□ 0.47
SS18-211ENST00000578954 AFMP43652 599 aa18■□□□□ 0.47
SS18-211ENST00000578954 RARRES1P49788 294 aa18■□□□□ 0.47
SS18-211ENST00000578954 GJA9P57773 515 aa18■□□□□ 0.47
SS18-211ENST00000578954 ZNF445P59923 1031 aa18■□□□□ 0.47
SS18-211ENST00000578954 PRKCEQ02156 737 aa18■□□□□ 0.47
SS18-211ENST00000578954 XKR3Q5GH77 459 aa18■□□□□ 0.47
SS18-211ENST00000578954 ANO5Q75V66 913 aa18■□□□□ 0.47
SS18-211ENST00000578954 PIGOQ8TEQ8 1089 aa18■□□□□ 0.47
SS18-211ENST00000578954 FAM167AQ96KS9 214 aa18■□□□□ 0.47
SS18-211ENST00000578954 BHMT2Q9H2M3 363 aa18■□□□□ 0.47
SS18-211ENST00000578954 SMARCAD1Q9H4L7 1026 aa18■□□□□ 0.47
SS18-211ENST00000578954 AZI2Q9H6S1 392 aa18■□□□□ 0.47
SS18-211ENST00000578954 KCND2Q9NZV8 630 aa18■□□□□ 0.47
SS18-211ENST00000578954 CEP350Q5VT06 3117 aa18■□□□□ 0.47
SS18-211ENST00000578954 MYMKA6NI61 221 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 ZBTB39O15060 712 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 OATP04181 439 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 INHAP05111 366 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 LGALS2P05162 132 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 CCND3P30281 292 aaPredicted RBP17.99■□□□□ 0.47
SS18-211ENST00000578954 CUL4BQ13620 913 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 CKAP2LQ8IYA6 745 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 STAMQ92783 540 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 LENG1Q96BZ8 264 aaPredicted RBP17.99■□□□□ 0.47
SS18-211ENST00000578954 C16orf70Q9BSU1 422 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 FUCA2Q9BTY2 467 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 NIFKQ9BYG3 293 aaKnown RBP17.99■□□□□ 0.47
SS18-211ENST00000578954 PPME1Q9Y570 386 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 PCDHA5Q9Y5H7 936 aa17.99■□□□□ 0.47
SS18-211ENST00000578954 A0A087WWV3 80 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 SYCE3A1L190 88 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 KLRC4O43908 158 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 SMC2O95347 1197 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 CPT1AP50416 773 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 DGKDQ16760 1214 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 ARSHQ5FYA8 562 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 UTP14CQ5TAP6 766 aaKnown RBP17.98■□□□□ 0.47
SS18-211ENST00000578954 C1orf186Q6ZWK4 172 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 OTUD6AQ7L8S5 288 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 GPBP1Q86WP2 473 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 DNAJC19Q96DA6 116 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 GSDMAQ96QA5 445 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 AP5M1Q9H0R1 490 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 SYNRGQ9UMZ2 1314 aa17.98■□□□□ 0.47
SS18-211ENST00000578954 PVALEFA0A1B0GWK0 134 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 ARHGEF35A5YM69 484 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 MSCO60682 206 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 ADAMTS4O75173 837 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 HSPA1AP0DMV8 641 aaKnown RBP17.97■□□□□ 0.47
SS18-211ENST00000578954 HSPA1BP0DMV9 641 aaKnown RBP17.97■□□□□ 0.47
SS18-211ENST00000578954 RARBP10826 455 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 GUCY2CP25092 1073 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 CASP1P29466 404 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 CTCFP49711 727 aaPredicted RBP17.97■□□□□ 0.47
SS18-211ENST00000578954 KCNB1Q14721 858 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 TARBP2Q15633 366 aaKnown RBP17.97■□□□□ 0.47
SS18-211ENST00000578954 BRDTQ58F21 947 aaPredicted RBP17.97■□□□□ 0.47
SS18-211ENST00000578954 RINT1Q6NUQ1 792 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 TRIM50Q86XT4 487 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 TRIML1Q8N9V2 468 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 ATP8B4Q8TF62 1192 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 BBXQ8WY36 941 aaPredicted RBP17.97■□□□□ 0.47
SS18-211ENST00000578954 DDX12PQ92771 950 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 ERCC4Q92889 916 aaPredicted RBP17.97■□□□□ 0.47
SS18-211ENST00000578954 GLG1Q92896 1179 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 SMARCE1Q969G3 411 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 CEP89Q96ST8 783 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 RUSC1Q9BVN2 902 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 GZF1Q9H116 711 aaPredicted RBP17.97■□□□□ 0.47
SS18-211ENST00000578954 BLZF1Q9H2G9 400 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 ERAP1Q9NZ08 941 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 DDX20Q9UHI6 824 aaKnown RBP17.97■□□□□ 0.47
SS18-211ENST00000578954 ARID2Q68CP9 1835 aa17.97■□□□□ 0.47
SS18-211ENST00000578954 FRMD3A2A2Y4 597 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms