RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 TCF7P36402 384 aaPredicted RBP17.01■□□□□ 0.31
SS18-206ENST00000577572 STAT5BP51692 787 aa17.01■□□□□ 0.31
SS18-206ENST00000577572 CUL4BQ13620 913 aa17.01■□□□□ 0.31
SS18-206ENST00000577572 MORC3Q14149 939 aa17.01■□□□□ 0.31
SS18-206ENST00000577572 CCL14Q16627 93 aa17.01■□□□□ 0.31
SS18-206ENST00000577572 SMARCAD1Q9H4L7 1026 aa17.01■□□□□ 0.31
SS18-206ENST00000577572 NRBP2Q9NSY0 501 aa17.01■□□□□ 0.31
SS18-206ENST00000577572 WBP1LQ9NX94 342 aa17.01■□□□□ 0.31
SS18-206ENST00000577572 ODF2LQ9ULJ1 636 aa17.01■□□□□ 0.31
SS18-206ENST00000577572 GABRQQ9UN88 632 aa17.01■□□□□ 0.31
SS18-206ENST00000577572 FRMD3A2A2Y4 597 aa17■□□□□ 0.31
SS18-206ENST00000577572 ARHGEF35A5YM69 484 aa17■□□□□ 0.31
SS18-206ENST00000577572 PRR29P0C7W0 189 aa17■□□□□ 0.31
SS18-206ENST00000577572 SMPD1P17405 629 aa17■□□□□ 0.31
SS18-206ENST00000577572 CYP2C19P33261 490 aa17■□□□□ 0.31
SS18-206ENST00000577572 RARRES1P49788 294 aa17■□□□□ 0.31
SS18-206ENST00000577572 PSMC6P62333 389 aa17■□□□□ 0.31
SS18-206ENST00000577572 NKX3-2P78367 333 aa17■□□□□ 0.31
SS18-206ENST00000577572 GSE1Q14687 1217 aa17■□□□□ 0.31
SS18-206ENST00000577572 HSDL1Q3SXM5 330 aa17■□□□□ 0.31
SS18-206ENST00000577572 COBLL1Q53SF7 1204 aa17■□□□□ 0.31
SS18-206ENST00000577572 BRDTQ58F21 947 aaPredicted RBP17■□□□□ 0.31
SS18-206ENST00000577572 GPBP1Q86WP2 473 aa17■□□□□ 0.31
SS18-206ENST00000577572 CCDC60Q8IWA6 550 aaPredicted RBP17■□□□□ 0.31
SS18-206ENST00000577572 CCDC65Q8IXS2 484 aa17■□□□□ 0.31
SS18-206ENST00000577572 GRAMD1CQ8IYS0 662 aa17■□□□□ 0.31
SS18-206ENST00000577572 CD99L2Q8TCZ2 262 aa17■□□□□ 0.31
SS18-206ENST00000577572 ZNF296Q8WUU4 475 aaPredicted RBP17■□□□□ 0.31
SS18-206ENST00000577572 DDX12PQ92771 950 aa17■□□□□ 0.31
SS18-206ENST00000577572 BPIFA3Q9BQP9 254 aa17■□□□□ 0.31
SS18-206ENST00000577572 NIFKQ9BYG3 293 aaKnown RBP17■□□□□ 0.31
SS18-206ENST00000577572 WRAP73Q9P2S5 460 aaPredicted RBP17■□□□□ 0.31
SS18-206ENST00000577572 KCNG1Q9UIX4 513 aa17■□□□□ 0.31
SS18-206ENST00000577572 MAN1B1Q9UKM7 699 aa17■□□□□ 0.31
SS18-206ENST00000577572 GNEQ9Y223 722 aaKnown RBP17■□□□□ 0.31
SS18-206ENST00000577572 A6NJR5 290 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 KPNA6O60684 536 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 DUSP11O75319 330 aaKnown RBP16.99■□□□□ 0.31
SS18-206ENST00000577572 STBD1O95210 358 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 HMGCRP04035 888 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 OATP04181 439 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 SSBP05455 408 aaKnown RBP eCLIP16.99■□□□□ 0.31
SS18-206ENST00000577572 CYBAP13498 195 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 GAP43P17677 238 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 ASIC1P78348 528 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 ZNF658Q5TYW1 1059 aaPredicted RBP16.99■□□□□ 0.31
SS18-206ENST00000577572 RINT1Q6NUQ1 792 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 C1orf186Q6ZWK4 172 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 SLAIN1Q8ND83 568 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 PIGOQ8TEQ8 1089 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 TRIB2Q92519 343 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 DNAJC19Q96DA6 116 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 CCDC43Q96MW1 224 aaKnown RBP16.99■□□□□ 0.31
SS18-206ENST00000577572 BCAS3Q9H6U6 928 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 ERAP1Q9NZ08 941 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 SEL1LQ9UBV2 794 aa16.99■□□□□ 0.31
SS18-206ENST00000577572 SEPT4O43236 478 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 KLRC4O43908 158 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 ZNF862O60290 1169 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 KRT18P05783 430 aaKnown RBP16.98■□□□□ 0.31
SS18-206ENST00000577572 SCP2P22307 547 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 CPT1AP50416 773 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 PRKCEQ02156 737 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 SP4Q02446 784 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 EHHADHQ08426 723 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 UGCGQ16739 394 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 DGKDQ16760 1214 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 ARSHQ5FYA8 562 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 DNAJC5GQ8N7S2 189 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 OR6J1Q8NGC5 347 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 RAET1EQ8TD07 263 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 BBXQ8WY36 941 aaPredicted RBP16.98■□□□□ 0.31
SS18-206ENST00000577572 STAMQ92783 540 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 AP5M1Q9H0R1 490 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 BLZF1Q9H2G9 400 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 C17orf75Q9HAS0 396 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 EXOC1Q9NV70 894 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 COL4A3BPQ9Y5P4 624 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 LOXHD1Q8IVV2 1947 aa16.98■□□□□ 0.31
SS18-206ENST00000577572 ADCY3O60266 1144 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 DGAT1O75907 488 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 KIF20AO95235 890 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 ERCC5P28715 1186 aaPredicted RBP16.97■□□□□ 0.31
SS18-206ENST00000577572 RFC5P40937 340 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 GIT2Q14161 759 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 KMT5BQ4FZB7 885 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 MAP3K21Q5TCX8 1036 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 PADI6Q6TGC4 694 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 ANO5Q75V66 913 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 SLC17A8Q8NDX2 589 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 MCPH1Q8NEM0 835 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 FAM200AQ8TCP9 573 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 ATP8B4Q8TF62 1192 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 GLG1Q92896 1179 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 PCYT2Q99447 389 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 JPH2Q9BR39 696 aaPredicted RBP16.97■□□□□ 0.31
SS18-206ENST00000577572 ZNF215Q9UL58 517 aaPredicted RBP16.97■□□□□ 0.31
SS18-206ENST00000577572 DOCK3Q8IZD9 2030 aa16.97■□□□□ 0.31
SS18-206ENST00000577572 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.96■□□□□ 0.31
SS18-206ENST00000577572 FSD2A1L4K1 749 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms