RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FAM163BP0C2L3 166 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 COL6A1P12109 1028 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 PTSQ03393 145 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 SLC35F1Q5T1Q4 408 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 IFIT1BQ5T764 474 aaKnown RBP7.02□□□□□ -1.29
VPS53-219ENST00000576019 STYK1Q6J9G0 422 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 ZNF354CQ86Y25 554 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 ZC3H7AQ8IWR0 971 aaKnown RBP7.02□□□□□ -1.29
VPS53-219ENST00000576019 IL22RA1Q8N6P7 574 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 GPATCH11Q8N954 259 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 XAGE3Q8WTP9 111 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 CYB5D2Q8WUJ1 264 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 INO80BQ9C086 356 aaPredicted RBP7.02□□□□□ -1.29
VPS53-219ENST00000576019 NKX2-4Q9H2Z4 354 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 NOL6Q9H6R4 1146 aaKnown RBP7.02□□□□□ -1.29
VPS53-219ENST00000576019 H2AFY2Q9P0M6 372 aaPredicted RBP7.02□□□□□ -1.29
VPS53-219ENST00000576019 GMPR2Q9P2T1 348 aaKnown RBP7.02□□□□□ -1.29
VPS53-219ENST00000576019 NRBP1Q9UHY1 535 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 GPR55Q9Y2T6 319 aaPredicted RBP7.02□□□□□ -1.29
VPS53-219ENST00000576019 PCDHGA9Q9Y5G4 932 aaKnown RBP7.02□□□□□ -1.29
VPS53-219ENST00000576019 PCDHGA8Q9Y5G5 932 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 PCDHGA7Q9Y5G6 932 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 PCDHGA6Q9Y5G7 932 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 PCDHGA3Q9Y5H0 932 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 PCDHGA2Q9Y5H1 932 aa7.02□□□□□ -1.29
VPS53-219ENST00000576019 AKAP11Q9UKA4 1901 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 USP47Q96K76 1375 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 A6NNZ2 444 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 F5H423 210 aaPredicted RBP7.01□□□□□ -1.29
VPS53-219ENST00000576019 TRAF5O00463 557 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 CFBP00751 764 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 SRGNP10124 158 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 ATP2A2P16615 1042 aaKnown RBP7.01□□□□□ -1.29
VPS53-219ENST00000576019 NTF4P34130 210 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 EPHX2P34913 555 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 SARSP49591 514 aaKnown RBP7.01□□□□□ -1.29
VPS53-219ENST00000576019 MRE11P49959 708 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 KPNA1P52294 538 aaPredicted RBP7.01□□□□□ -1.29
VPS53-219ENST00000576019 USP14P54578 494 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 NLRP12P59046 1061 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 ZNF445P59923 1031 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 AUHQ13825 339 aaKnown RBP7.01□□□□□ -1.29
VPS53-219ENST00000576019 SIM2Q14190 667 aaPredicted RBP7.01□□□□□ -1.29
VPS53-219ENST00000576019 ZNF267Q14586 743 aaPredicted RBP7.01□□□□□ -1.29
VPS53-219ENST00000576019 PLA2G4EQ3MJ16 856 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 ANKRD39Q53RE8 183 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 PRAMEF13Q5VWM6 474 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 DENND5AQ6IQ26 1287 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 FAM117BQ6P1L5 589 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 UBE3DQ7Z6J8 389 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 FAM186BQ8IYM0 893 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 NUDT8Q8WV74 236 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 POF1BQ8WVV4 589 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 TRIM47Q96LD4 638 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 NUP88Q99567 741 aaPredicted RBP7.01□□□□□ -1.29
VPS53-219ENST00000576019 SENP2Q9HC62 589 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 CABP5Q9NP86 173 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 C1orf112Q9NSG2 853 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 FRRS1LQ9P0K9 344 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 DNM3Q9UQ16 869 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 MRFAP1Q9Y605 127 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 DAPK1P53355 1430 aa7.01□□□□□ -1.29
VPS53-219ENST00000576019 A0A087WZG4 1122 aa7□□□□□ -1.29
VPS53-219ENST00000576019 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7□□□□□ -1.29
VPS53-219ENST00000576019 ABHD14A-ACY1A0A1B0GW23 586 aa7□□□□□ -1.29
VPS53-219ENST00000576019 SLC35F4A4IF30 521 aa7□□□□□ -1.29
VPS53-219ENST00000576019 FANCGO15287 622 aa7□□□□□ -1.29
VPS53-219ENST00000576019 AP1G1O43747 822 aa7□□□□□ -1.29
VPS53-219ENST00000576019 ZNF500O60304 480 aaPredicted RBP7□□□□□ -1.29
VPS53-219ENST00000576019 ZRANB2O95218 330 aaKnown RBP eCLIP7□□□□□ -1.29
VPS53-219ENST00000576019 LDHCP07864 332 aa7□□□□□ -1.29
VPS53-219ENST00000576019 SLFN14P0C7P3 912 aa7□□□□□ -1.29
VPS53-219ENST00000576019 CHRNA5P30532 468 aa7□□□□□ -1.29
VPS53-219ENST00000576019 HOXC12P31275 282 aa7□□□□□ -1.29
VPS53-219ENST00000576019 ERVK-24P63145 666 aa7□□□□□ -1.29
VPS53-219ENST00000576019 OCRLQ01968 901 aa7□□□□□ -1.29
VPS53-219ENST00000576019 FAPQ12884 760 aa7□□□□□ -1.29
VPS53-219ENST00000576019 KCTD2Q14681 263 aa7□□□□□ -1.29
VPS53-219ENST00000576019 CLUL1Q15846 466 aa7□□□□□ -1.29
VPS53-219ENST00000576019 NOL9Q5SY16 702 aaKnown RBP7□□□□□ -1.29
VPS53-219ENST00000576019 NBPF12Q5TAG4 269 aaPredicted RBP7□□□□□ -1.29
VPS53-219ENST00000576019 B3GNT9Q6UX72 402 aa7□□□□□ -1.29
VPS53-219ENST00000576019 CMIPQ8IY22 773 aa7□□□□□ -1.29
VPS53-219ENST00000576019 ZNF507Q8TCN5 953 aa7□□□□□ -1.29
VPS53-219ENST00000576019 DCAF4Q8WV16 495 aa7□□□□□ -1.29
VPS53-219ENST00000576019 SLC5A5Q92911 643 aa7□□□□□ -1.29
VPS53-219ENST00000576019 TNFRSF25Q93038 417 aa7□□□□□ -1.29
VPS53-219ENST00000576019 SYTL4Q96C24 671 aaPredicted RBP7□□□□□ -1.29
VPS53-219ENST00000576019 TRMT2BQ96GJ1 504 aaKnown RBP7□□□□□ -1.29
VPS53-219ENST00000576019 ZDHHC15Q96MV8 337 aa7□□□□□ -1.29
VPS53-219ENST00000576019 TAAR9Q96RI9 348 aa7□□□□□ -1.29
VPS53-219ENST00000576019 CDC5LQ99459 802 aaKnown RBP7□□□□□ -1.29
VPS53-219ENST00000576019 NAA15Q9BXJ9 866 aaKnown RBP7□□□□□ -1.29
VPS53-219ENST00000576019 C9orf78Q9NZ63 289 aaPredicted RBP7□□□□□ -1.29
VPS53-219ENST00000576019 FNIP2Q9P278 1114 aa7□□□□□ -1.29
VPS53-219ENST00000576019 HACL1Q9UJ83 578 aa7□□□□□ -1.29
VPS53-219ENST00000576019 PHF24Q9UPV7 400 aa7□□□□□ -1.29
VPS53-219ENST00000576019 INVSQ9Y283 1065 aa7□□□□□ -1.29
VPS53-219ENST00000576019 YTHDC2Q9H6S0 1430 aaKnown RBP7□□□□□ -1.29
VPS53-219ENST00000576019 ACEP12821 1306 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms