RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 TRPM8Q7Z2W7 1104 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 VSIG1Q86XK7 387 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 SLC44A5Q8NCS7 719 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 PRCCQ92733 491 aaPredicted RBP10.43□□□□□ -0.74
CCDC40-212ENST00000574799 TSG101Q99816 390 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 TLR10Q9BXR5 811 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 KDM4CQ9H3R0 1056 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 SLC39A2Q9NP94 309 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 PAPOLBQ9NRJ5 636 aaKnown RBP10.43□□□□□ -0.74
CCDC40-212ENST00000574799 H0Y3Z8 333 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 IRF6O14896 467 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 CYTH3O43739 400 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 CHN1P15882 459 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 ITIH3Q06033 890 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 KLHL30Q0D2K2 578 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 CUL1Q13616 776 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 SFMBT2Q5VUG0 894 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 ADSSL1Q8N142 457 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 SEPT11Q9NVA2 429 aaKnown RBP10.43□□□□□ -0.74
CCDC40-212ENST00000574799 PANK4Q9NVE7 773 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 RGS17Q9UGC6 210 aaPredicted RBP10.43□□□□□ -0.74
CCDC40-212ENST00000574799 BRCA1P38398 1863 aaKnown RBP10.43□□□□□ -0.74
CCDC40-212ENST00000574799 IGF2BP3O00425 579 aaKnown RBP eCLIP10.43□□□□□ -0.74
CCDC40-212ENST00000574799 DNAJC8O75937 253 aaPredicted RBP10.43□□□□□ -0.74
CCDC40-212ENST00000574799 PRLRP16471 622 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 IFI16Q16666 785 aaKnown RBP10.43□□□□□ -0.74
CCDC40-212ENST00000574799 MAGEC3Q8TD91 643 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 TBC1D5Q92609 795 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 TATDN2Q93075 761 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 MTMR8Q96EF0 704 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 GAKO14976 1311 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 PP2D1A8MPX8 630 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 SUN1O94901 812 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 PECAM1P16284 738 aaPredicted RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 AMPD3Q01432 767 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 MUM1Q2TAK8 710 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 INTS8Q75QN2 995 aaKnown RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 KSR1Q8IVT5 923 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 C3orf20Q8ND61 904 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 VCXQ9H320 206 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 PLCB1Q9NQ66 1216 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 ATP8A2Q9NTI2 1148 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 ARHGAP20Q9P2F6 1191 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 FER1L6Q2WGJ9 1857 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 KLHL33A6NCF5 533 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 SLURP2P0DP57 97 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 PAPOLAP51003 745 aaKnown RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 ZNF844Q08AG5 666 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 GRIK3Q13003 919 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 LRRC23Q53EV4 343 aaPredicted RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 SAMD1Q6SPF0 538 aaPredicted RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 C6orf89Q6UWU4 347 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 LRIG3Q6UXM1 1119 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 TMTC3Q6ZXV5 915 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 PEX26Q7Z412 305 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 TMX4Q9H1E5 349 aaPredicted RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 NDST4Q9H3R1 872 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 GDF3Q9NR23 364 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 ZFATQ9P243 1243 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 ADAMTS1Q9UHI8 967 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 AMACRQ9UHK6 382 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 MAD2L2Q9UI95 211 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 RASSF10A6NK89 507 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 MGRN1O60291 552 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 CCND1P24385 295 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 CCNE1P24864 410 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 POLR2FP61218 127 aaKnown RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 ZRSR2Q15696 482 aaKnown RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 MEA1Q16626 185 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 STAG2Q8N3U4 1231 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 ANKS1AQ92625 1134 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 DHTKD1Q96HY7 919 aaPredicted RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 MXD3Q9BW11 206 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 RNF26Q9BY78 433 aaPredicted RBP10.42□□□□□ -0.74
CCDC40-212ENST00000574799 GOLPH3Q9H4A6 298 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 MLXIPLQ9NP71 852 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 KCNQ5Q9NR82 932 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 HOMER3Q9NSC5 361 aa10.42□□□□□ -0.74
CCDC40-212ENST00000574799 CCDC169A6NNP5 214 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 STXBP3O00186 592 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 RTN2O75298 545 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 KCNJ2P63252 427 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 LRRC14Q15048 493 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 PDCD2Q16342 344 aaPredicted RBP10.41□□□□□ -0.74
CCDC40-212ENST00000574799 DYMQ7RTS9 669 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 SH3RF1Q7Z6J0 888 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 LRRC34Q8IZ02 419 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 FMO2Q99518 471 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 PRMT1Q99873 361 aaKnown RBP10.41□□□□□ -0.74
CCDC40-212ENST00000574799 FAM205AQ6ZU69 1335 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 GPR75-ASB3A0A0A6YYF3 556 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 SART1O43290 800 aaKnown RBP10.41□□□□□ -0.74
CCDC40-212ENST00000574799 EDIL3O43854 480 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 UBOX5O94941 541 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 GHRP10912 638 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 NQO1P15559 274 aaKnown RBP10.41□□□□□ -0.74
CCDC40-212ENST00000574799 PLTPP55058 493 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 NUGGCQ68CJ6 796 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 RASGRP4Q8TDF6 673 aa10.41□□□□□ -0.74
CCDC40-212ENST00000574799 TEKT4Q8WW24 435 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms