RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PSAPP07602 524 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 OR52Z1P0C646 297 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 CDK7P50613 346 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 FAM160B1Q5W0V3 765 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 ATL3Q6DD88 541 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 B3GNT9Q6UX72 402 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 CXCL17Q6UXB2 119 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 PLPPR4Q7Z2D5 763 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 FERMT3Q86UX7 667 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 HAS1Q92839 578 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 RAB34Q9BZG1 259 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 PPP1R12CQ9BZL4 782 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 IL23AQ9NPF7 189 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 C11orf16Q9NQ32 467 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 STK24Q9Y6E0 443 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 WDR81Q562E7 1941 aa23.17■■□□□ 1.3
VPS53-210ENST00000571456 IGKV6D-21A0A0A0MT36 114 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 DKC1O60832 514 aaKnown RBP eCLIP23.16■■□□□ 1.3
VPS53-210ENST00000571456 LGALS2P05162 132 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 NUCB2P80303 420 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 ZNF174Q15697 407 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 TMEM266Q2M3C6 531 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 ARL6IP4Q66PJ3 421 aaKnown RBP23.16■■□□□ 1.3
VPS53-210ENST00000571456 NFRKBQ6P4R8 1299 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 ABHD15Q6UXT9 468 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 AFAP1L1Q8TED9 768 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 VTI1AQ96AJ9 217 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 BCAS3Q9H6U6 928 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 ERAP1Q9NZ08 941 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 ATP6V1DQ9Y5K8 247 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 KAT6AQ92794 2004 aa23.16■■□□□ 1.3
VPS53-210ENST00000571456 H3BRB1 525 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 CCNE2O96020 404 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 F13A1P00488 732 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 FGBP02675 491 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 SUPT20HL2P0C7V6 817 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 PTGS1P23219 599 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 SP4Q02446 784 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 PPP2R2DQ66LE6 453 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 SESTD1Q86VW0 696 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 ZNF396Q96N95 335 aaPredicted RBP23.15■■□□□ 1.3
VPS53-210ENST00000571456 C16orf70Q9BSU1 422 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 TUT1Q9H6E5 874 aaKnown RBP23.15■■□□□ 1.3
VPS53-210ENST00000571456 TTC12Q9H892 705 aaPredicted RBP23.15■■□□□ 1.3
VPS53-210ENST00000571456 DISC1Q9NRI5 854 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 SAMM50Q9Y512 469 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 PCDHB6Q9Y5E3 794 aa23.15■■□□□ 1.3
VPS53-210ENST00000571456 MORC2Q9Y6X9 1032 aaPredicted RBP23.15■■□□□ 1.3
VPS53-210ENST00000571456 DDX39AO00148 427 aaKnown RBP23.14■■□□□ 1.29
VPS53-210ENST00000571456 HAS3O00219 553 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 BRD1O95696 1058 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 STAT5BP51692 787 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 PTGDRQ13258 359 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 ITGA7Q13683 1181 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 MIER3Q7Z3K6 550 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 SLC43A3Q8NBI5 491 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 NEK9Q8TD19 979 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 GLG1Q92896 1179 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 VAV3Q9UKW4 847 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 COG5Q9UP83 839 aa23.14■■□□□ 1.29
VPS53-210ENST00000571456 FAM86C2PA6NEL3 165 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 ARVCFO00192 962 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 WNT7AO00755 349 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 TLL1O43897 1013 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 SORBS3O60504 671 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 CYP2C18P33260 490 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 TXKP42681 527 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 IRX5P78411 483 aaPredicted RBP23.13■■□□□ 1.29
VPS53-210ENST00000571456 ATP2C1P98194 919 aaPredicted RBP23.13■■□□□ 1.29
VPS53-210ENST00000571456 PDIA5Q14554 519 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 C4orf32Q8N8J7 132 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 KAT2BQ92831 832 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 ATP6V0A1Q93050 837 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 SNX27Q96L92 541 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 UNC45AQ9H3U1 944 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 ZNF302Q9NR11 478 aa23.13■■□□□ 1.29
VPS53-210ENST00000571456 CIZ1Q9ULV3 898 aaPredicted RBP23.13■■□□□ 1.29
VPS53-210ENST00000571456 BACH1O14867 736 aa23.12■■□□□ 1.29
VPS53-210ENST00000571456 TLR3O15455 904 aaKnown RBP23.12■■□□□ 1.29
VPS53-210ENST00000571456 PSEN2P49810 448 aa23.12■■□□□ 1.29
VPS53-210ENST00000571456 FXR2P51116 673 aaKnown RBP eCLIP23.12■■□□□ 1.29
VPS53-210ENST00000571456 RABGGTBP53611 331 aa23.12■■□□□ 1.29
VPS53-210ENST00000571456 MFSD10Q14728 455 aa23.12■■□□□ 1.29
VPS53-210ENST00000571456 EPHA7Q15375 998 aa23.12■■□□□ 1.29
VPS53-210ENST00000571456 KIAA0753Q2KHM9 967 aa23.12■■□□□ 1.29
VPS53-210ENST00000571456 KHSRPQ92945 711 aaKnown RBP eCLIP23.12■■□□□ 1.29
VPS53-210ENST00000571456 FAM167AQ96KS9 214 aa23.12■■□□□ 1.29
VPS53-210ENST00000571456 TMEM60Q9H2L4 133 aa23.12■■□□□ 1.29
VPS53-210ENST00000571456 MAFBQ9Y5Q3 323 aaPredicted RBP23.12■■□□□ 1.29
VPS53-210ENST00000571456 GTPBP6O43824 516 aaPredicted RBP23.11■■□□□ 1.29
VPS53-210ENST00000571456 ZNF286BP0CG31 522 aa23.11■■□□□ 1.29
VPS53-210ENST00000571456 POU3F3P20264 500 aaPredicted RBP23.11■■□□□ 1.29
VPS53-210ENST00000571456 SPIRE1Q08AE8 756 aa23.11■■□□□ 1.29
VPS53-210ENST00000571456 UTP14CQ5TAP6 766 aaKnown RBP23.11■■□□□ 1.29
VPS53-210ENST00000571456 DTHD1Q6ZMT9 781 aa23.11■■□□□ 1.29
VPS53-210ENST00000571456 OTOP2Q7RTS6 562 aa23.11■■□□□ 1.29
VPS53-210ENST00000571456 FAM126BQ8IXS8 530 aa23.11■■□□□ 1.29
VPS53-210ENST00000571456 C7orf31Q8N865 590 aa23.11■■□□□ 1.29
VPS53-210ENST00000571456 ERMNQ8TAM6 284 aa23.11■■□□□ 1.29
VPS53-210ENST00000571456 RBM19Q9Y4C8 960 aaKnown RBP23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms