RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 BLZF1Q9H2G9 400 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 THAP9Q9H5L6 903 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 RRAGCQ9HB90 399 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 A1CFQ9NQ94 594 aaKnown RBP8.86□□□□□ -0.99
VPS39-213ENST00000570062 DBR1Q9UK59 544 aaKnown RBP8.86□□□□□ -0.99
VPS39-213ENST00000570062 ODF2LQ9ULJ1 636 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 PPME1Q9Y570 386 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 ADGRG1Q9Y653 693 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 BAZ2BQ9UIF8 2168 aaKnown RBP8.86□□□□□ -0.99
VPS39-213ENST00000570062 SYNRGQ9UMZ2 1314 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 RCCD1A6NED2 376 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 MANSC4A6NHS7 340 aaPredicted RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 ASB14A6NK59 587 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 KLRC4O43908 158 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 TBCAO75347 108 aaKnown RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 SLITRK3O94933 977 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 TPM1P09493 284 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 SPATA31C1P0DKV0 1188 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 ARP10275 920 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 MAPTP10636 758 aaKnown RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 FCER1AP12319 257 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 MYCLP12524 364 aaPredicted RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 EIF2AK2P19525 551 aaKnown RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 BMP6P22004 513 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 CCNE1P24864 410 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 SLC12A3P55017 1021 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 PSMC5P62195 406 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 MRPS9P82933 396 aaKnown RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 FANCCQ00597 558 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 ALCAMQ13740 583 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 NEDD9Q14511 834 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 HSP90AA2PQ14568 343 aaPredicted RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 TREML2Q5T2D2 321 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 MAP1SQ66K74 1059 aaPredicted RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 ISM2Q6H9L7 571 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 ZSCAN30Q86W11 494 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 NCAPG2Q86XI2 1143 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 C4orf19Q8IY42 314 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 EXOC8Q8IYI6 725 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 MYOCDQ8IZQ8 938 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 SMCR8Q8TEV9 937 aaPredicted RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 NELFBQ8WX92 580 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 ATP6V0A1Q93050 837 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 WNK4Q96J92 1243 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 CCDC43Q96MW1 224 aaKnown RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 PARK7Q99497 189 aaKnown RBP8.85□□□□□ -0.99
VPS39-213ENST00000570062 PLIN2Q99541 437 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 C17orf75Q9HAS0 396 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 ANKEF1Q9NU02 776 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 PANK4Q9NVE7 773 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 FANCLQ9NW38 375 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 SLC5A4Q9NY91 659 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 RIPK3Q9Y572 518 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 PCDHA10Q9Y5I2 948 aa8.85□□□□□ -0.99
VPS39-213ENST00000570062 FRMD3A2A2Y4 597 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 TESPA1A2RU30 521 aaPredicted RBP8.84□□□□□ -0.99
VPS39-213ENST00000570062 MYMKA6NI61 221 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 SPATA31C2B4DYI2 1134 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 TLL1O43897 1013 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 MED24O75448 989 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 TOMM70O94826 608 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 CELF2O95319 508 aaKnown RBP8.84□□□□□ -0.99
VPS39-213ENST00000570062 SSBP05455 408 aaKnown RBP eCLIP8.84□□□□□ -0.99
VPS39-213ENST00000570062 PSAPP07602 524 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 IDEP14735 1019 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 ZNF18P17022 549 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 CYP11B2P19099 503 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 GUCY2CP25092 1073 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 PRCPP42785 496 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 SNRPFP62306 86 aaKnown RBP8.84□□□□□ -0.99
VPS39-213ENST00000570062 IRF5Q13568 498 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 HERC4Q5GLZ8 1057 aaPredicted RBP8.84□□□□□ -0.99
VPS39-213ENST00000570062 FAM26FQ5R3K3 315 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 CENPPQ6IPU0 288 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 MIS18BP1Q6P0N0 1132 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 SLC30A10Q6XR72 485 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 GPBP1Q86WP2 473 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 TPH2Q8IWU9 490 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 CCDC150Q8NCX0 1101 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 CYP2W1Q8TAV3 490 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 GOLGA5Q8TBA6 731 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 STAMQ92783 540 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 P2RX5Q93086 422 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 CLMNQ96JQ2 1002 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 MMP19Q99542 508 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 MOV10L1Q9BXT6 1211 aaKnown RBP8.84□□□□□ -0.99
VPS39-213ENST00000570062 UNC45AQ9H3U1 944 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 ZNF408Q9H9D4 720 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 COL20A1Q9P218 1284 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 MORF4L1Q9UBU8 362 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 LIMA1Q9UHB6 759 aaKnown RBP8.84□□□□□ -0.99
VPS39-213ENST00000570062 FZD1Q9UP38 647 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 DIS3Q9Y2L1 958 aaKnown RBP8.84□□□□□ -0.99
VPS39-213ENST00000570062 SAMM50Q9Y512 469 aa8.84□□□□□ -0.99
VPS39-213ENST00000570062 UBE4BO95155 1302 aa8.83□□□□□ -1
VPS39-213ENST00000570062 CCL15-CCL14A0A0B4J2E2 113 aa8.83□□□□□ -1
VPS39-213ENST00000570062 ARHGEF35A5YM69 484 aa8.83□□□□□ -1
VPS39-213ENST00000570062 H0YCG3 227 aa8.83□□□□□ -1
VPS39-213ENST00000570062 PDHXO00330 501 aa8.83□□□□□ -1
VPS39-213ENST00000570062 DHX15O43143 795 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms