RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TMOD2Q9NZR1 351 aa9.63□□□□□ -0.87
LINC00558-201ENST00000569422 ADAM21Q9UKJ8 722 aa9.63□□□□□ -0.87
LINC00558-201ENST00000569422 HDAC9Q9UKV0 1011 aa9.63□□□□□ -0.87
LINC00558-201ENST00000569422 ZBTB21Q9ULJ3 1066 aa9.63□□□□□ -0.87
LINC00558-201ENST00000569422 OPLAHO14841 1288 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 EIF3JO75822 258 aaKnown RBP9.62□□□□□ -0.87
LINC00558-201ENST00000569422 NMT1P30419 496 aaKnown RBP9.62□□□□□ -0.87
LINC00558-201ENST00000569422 CKAP4Q07065 602 aaKnown RBP9.62□□□□□ -0.87
LINC00558-201ENST00000569422 GJB7Q6PEY0 223 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 DYDC2Q96IM9 177 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 LRRC1Q9BTT6 524 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 GLIS2Q9BZE0 524 aaPredicted RBP9.62□□□□□ -0.87
LINC00558-201ENST00000569422 ZNF277Q9NRM2 450 aaPredicted RBP9.62□□□□□ -0.87
LINC00558-201ENST00000569422 SNX12Q9UMY4 172 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 JRKLQ9Y4A0 524 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 PCDHA2Q9Y5H9 948 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 LY75O60449 1722 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 MYO3BQ8WXR4 1341 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 A0A087X0T9 212 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 MAP2K7O14733 419 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 FAM228BP0C875 321 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 NOP2P46087 812 aaKnown RBP9.62□□□□□ -0.87
LINC00558-201ENST00000569422 SPIRE1Q08AE8 756 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 AP3B2Q13367 1082 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 KIAA0753Q2KHM9 967 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 COBLL1Q53SF7 1204 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 LENG9Q96B70 501 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 OSBPL9Q96SU4 736 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 TMEM39BQ9GZU3 492 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 GBP3Q9H0R5 595 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 KCTD10Q9H3F6 313 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 HOMER2Q9NSB8 354 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 ARMCX3Q9UH62 379 aaPredicted RBP9.62□□□□□ -0.87
LINC00558-201ENST00000569422 SERPINA10Q9UK55 444 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 RABGAP1Q9Y3P9 1069 aa9.62□□□□□ -0.87
LINC00558-201ENST00000569422 PALMO75781 387 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 AKAP3O75969 853 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 ZKSCAN8Q15776 578 aaPredicted RBP9.61□□□□□ -0.87
LINC00558-201ENST00000569422 LRCH2Q5VUJ6 765 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 HGSNATQ68CP4 663 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 EP400NLQ6ZTU2 488 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 TRIM59Q8IWR1 403 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 CPXCR1Q8N123 301 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 PROCA1Q8NCQ7 364 aaPredicted RBP9.61□□□□□ -0.87
LINC00558-201ENST00000569422 BANK1Q8NDB2 785 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 NAP1L4Q99733 375 aaKnown RBP9.61□□□□□ -0.87
LINC00558-201ENST00000569422 GLT8D2Q9H1C3 349 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.61□□□□□ -0.87
LINC00558-201ENST00000569422 DMGDHQ9UI17 866 aaKnown RBP9.61□□□□□ -0.87
LINC00558-201ENST00000569422 TMCO5BA8MYB1 307 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 FAM13AO94988 1023 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 KLRC1P26715 233 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 RPA1P27694 616 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 CYP2C19P33261 490 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 PPARDQ03181 441 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 DGKZQ13574 1117 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 KNOP1Q1ED39 458 aaKnown RBP9.61□□□□□ -0.87
LINC00558-201ENST00000569422 CREG2Q8IUH2 290 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 LARGE2Q8N3Y3 721 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 HNRNPLLQ8WVV9 542 aaKnown RBP9.61□□□□□ -0.87
LINC00558-201ENST00000569422 NOX5Q96PH1 765 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 CEP72Q9P209 647 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 XRCC5P13010 732 aaKnown RBP9.61□□□□□ -0.87
LINC00558-201ENST00000569422 PAFAH1B1P43034 410 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 COG2Q14746 738 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 DLGAP5Q15398 846 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 ASIC2Q16515 512 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 OGFOD1Q8N543 542 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 SYT2Q8N9I0 419 aaPredicted RBP9.61□□□□□ -0.87
LINC00558-201ENST00000569422 WDR18Q9BV38 432 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 PNMA2Q9UL42 364 aa9.61□□□□□ -0.87
LINC00558-201ENST00000569422 UBR3Q6ZT12 1888 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 ESYT3A0FGR9 886 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 HNRNPH3P31942 346 aaKnown RBP9.6□□□□□ -0.87
LINC00558-201ENST00000569422 HOXD13P35453 343 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 SREBF1P36956 1147 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 CYP2J2P51589 502 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 CDK17Q00537 523 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 SATB1Q01826 763 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 HYIQ5T013 277 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 CCDC70Q6NSX1 233 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 ZNF662Q6ZS27 426 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.6□□□□□ -0.87
LINC00558-201ENST00000569422 SPATA4Q8NEY3 305 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 CEP63Q96MT8 703 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 ARHGEF10LQ9HCE6 1279 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 CDK5RAP2Q96SN8 1893 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 CYP3A7-CYP3A51PA0A087WV96 503 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 ANO9A1A5B4 782 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 GAS7O60861 476 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 SERPING1P05155 500 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 CYP3A7P24462 503 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 HNRNPH2P55795 449 aaKnown RBP9.6□□□□□ -0.87
LINC00558-201ENST00000569422 EN1Q05925 392 aaPredicted RBP9.6□□□□□ -0.87
LINC00558-201ENST00000569422 EXOC3L4Q17RC7 722 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 SND1Q7KZF4 910 aaKnown RBP eCLIP9.6□□□□□ -0.87
LINC00558-201ENST00000569422 CNKSR1Q969H4 720 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 PURBQ96QR8 312 aaKnown RBP9.6□□□□□ -0.87
LINC00558-201ENST00000569422 UBXN6Q9BZV1 441 aa9.6□□□□□ -0.87
LINC00558-201ENST00000569422 SEPT11Q9NVA2 429 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 134.6 ms