RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TNFRSF25Q93038 417 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 ZSCAN31Q96LW9 406 aaPredicted RBP17.01■□□□□ 0.31
VPS39-210ENST00000568357 GAS2L1Q99501 681 aaPredicted RBP17.01■□□□□ 0.31
VPS39-210ENST00000568357 RIT2Q99578 217 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 PRDM12Q9H4Q4 367 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 TUBE1Q9UJT0 475 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 MAFBQ9Y5Q3 323 aaPredicted RBP17.01■□□□□ 0.31
VPS39-210ENST00000568357 BTBD18B2RXH4 712 aa17■□□□□ 0.31
VPS39-210ENST00000568357 SLC37A4O43826 429 aa17■□□□□ 0.31
VPS39-210ENST00000568357 GAS7O60861 476 aa17■□□□□ 0.31
VPS39-210ENST00000568357 CAND2O75155 1236 aa17■□□□□ 0.31
VPS39-210ENST00000568357 PSMD10O75832 226 aa17■□□□□ 0.31
VPS39-210ENST00000568357 CHRNA1P02708 482 aa17■□□□□ 0.31
VPS39-210ENST00000568357 ATP2A2P16615 1042 aaKnown RBP17■□□□□ 0.31
VPS39-210ENST00000568357 KRT2P35908 639 aa17■□□□□ 0.31
VPS39-210ENST00000568357 SLC26A2P50443 739 aa17■□□□□ 0.31
VPS39-210ENST00000568357 MRPS5P82675 430 aaKnown RBP17■□□□□ 0.31
VPS39-210ENST00000568357 RABEP1Q15276 862 aa17■□□□□ 0.31
VPS39-210ENST00000568357 CCDC85BQ15834 202 aaPredicted RBP17■□□□□ 0.31
VPS39-210ENST00000568357 FAM26DQ5JW98 314 aa17■□□□□ 0.31
VPS39-210ENST00000568357 LRCH2Q5VUJ6 765 aa17■□□□□ 0.31
VPS39-210ENST00000568357 KRT40Q6A162 431 aa17■□□□□ 0.31
VPS39-210ENST00000568357 TAF2Q6P1X5 1199 aa17■□□□□ 0.31
VPS39-210ENST00000568357 PDXDC2PQ6P474 469 aa17■□□□□ 0.31
VPS39-210ENST00000568357 CNKSR3Q6P9H4 555 aa17■□□□□ 0.31
VPS39-210ENST00000568357 NEK8Q86SG6 692 aa17■□□□□ 0.31
VPS39-210ENST00000568357 RPAINQ86UA6 219 aa17■□□□□ 0.31
VPS39-210ENST00000568357 ETNPPLQ8TBG4 499 aa17■□□□□ 0.31
VPS39-210ENST00000568357 ATP8B4Q8TF62 1192 aa17■□□□□ 0.31
VPS39-210ENST00000568357 DNAJB3Q8WWF6 145 aa17■□□□□ 0.31
VPS39-210ENST00000568357 LLPHQ9BRT6 129 aaKnown RBP17■□□□□ 0.31
VPS39-210ENST00000568357 UNC45AQ9H3U1 944 aa17■□□□□ 0.31
VPS39-210ENST00000568357 DDX25Q9UHL0 483 aaKnown RBP17■□□□□ 0.31
VPS39-210ENST00000568357 SCN5AQ14524 2016 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 BDP1A6H8Y1 2624 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 MMP1P03956 469 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 PSAPP07602 524 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 MYOGP15173 224 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 ADGRE1Q14246 886 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 DBF4BQ8NFT6 615 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 TNPO1Q92973 898 aaKnown RBP16.99■□□□□ 0.31
VPS39-210ENST00000568357 UPF2Q9HAU5 1272 aaKnown RBP16.99■□□□□ 0.31
VPS39-210ENST00000568357 SH2B1Q9NRF2 756 aaPredicted RBP16.99■□□□□ 0.31
VPS39-210ENST00000568357 DISC1Q9NRI5 854 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 GABBR1Q9UBS5 961 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 YBX2Q9Y2T7 364 aaKnown RBP16.99■□□□□ 0.31
VPS39-210ENST00000568357 SAMM50Q9Y512 469 aa16.99■□□□□ 0.31
VPS39-210ENST00000568357 NCOR1O75376 2440 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 WDR64B1ANS9 1081 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 ZBTB42B2RXF5 422 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 CHMP2AO43633 222 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 HBP1O60381 514 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 BAIAP3O94812 1187 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 WDR5P61964 334 aaKnown RBP16.98■□□□□ 0.31
VPS39-210ENST00000568357 PLEKHG4Q58EX7 1191 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 PPP4R3AQ6IN85 833 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 MTHFD1LQ6UB35 978 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 B3GNT9Q6UX72 402 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 TRMT1LQ7Z2T5 733 aaKnown RBP16.98■□□□□ 0.31
VPS39-210ENST00000568357 PHOSPHO2Q8TCD6 241 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 TEKT3Q9BXF9 490 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 FAM49AQ9H0Q0 323 aaPredicted RBP16.98■□□□□ 0.31
VPS39-210ENST00000568357 MSRAQ9UJ68 235 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 PCDHA2Q9Y5H9 948 aa16.98■□□□□ 0.31
VPS39-210ENST00000568357 TRIP12Q14669 1992 aaPredicted RBP16.98■□□□□ 0.31
VPS39-210ENST00000568357 ABHD14A-ACY1A0A1B0GW23 586 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 CCNT1O60563 726 aaKnown RBP16.97■□□□□ 0.31
VPS39-210ENST00000568357 CD2BP2O95400 341 aaKnown RBP16.97■□□□□ 0.31
VPS39-210ENST00000568357 KLRC1P26715 233 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 GUCY1B3Q02153 619 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 MGAT3Q09327 533 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 TRIM29Q14134 588 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 IKBKEQ14164 716 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 RAB30Q15771 203 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 TMCO2Q7Z6W1 182 aaPredicted RBP16.97■□□□□ 0.31
VPS39-210ENST00000568357 CKAP2LQ8IYA6 745 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 DIS3L2Q8IYB7 885 aaKnown RBP16.97■□□□□ 0.31
VPS39-210ENST00000568357 IL27Q8NEV9 243 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 BBXQ8WY36 941 aaPredicted RBP16.97■□□□□ 0.31
VPS39-210ENST00000568357 TBC1D32Q96NH3 1257 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 NKX2-4Q9H2Z4 354 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 BRMS1Q9HCU9 246 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 KCNMB3Q9NPA1 279 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 TCEAL9Q9UHQ7 104 aa16.97■□□□□ 0.31
VPS39-210ENST00000568357 ZNF862O60290 1169 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 GCFC2P16383 781 aaKnown RBP16.96■□□□□ 0.31
VPS39-210ENST00000568357 SFNP31947 248 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 DEFB103AP81534 67 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 MKRN4PQ13434 485 aaPredicted RBP16.96■□□□□ 0.31
VPS39-210ENST00000568357 UGCGQ16739 394 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 ZNF484Q5JVG2 852 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.96■□□□□ 0.31
VPS39-210ENST00000568357 MIER3Q7Z3K6 550 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 RSPH3Q86UC2 560 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 HERC6Q8IVU3 1022 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 HAS1Q92839 578 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 SLC9A7Q96T83 725 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 C1QTNF1Q9BXJ1 281 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 PCDHA11Q9Y5I1 949 aa16.96■□□□□ 0.31
VPS39-210ENST00000568357 TET1Q8NFU7 2136 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms