RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 TRAPPC10P48553 1259 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 NBR1Q14596 966 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 TMEM240Q5SV17 173 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 ZNF618Q5T7W0 954 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 RASIP1Q5U651 963 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 PDXDC2PQ6P474 469 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 POTEBQ6S5H4 581 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 LRRC8DQ7L1W4 858 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 MIER3Q7Z3K6 550 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 CCDC155Q8N6L0 562 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 INTS4Q96HW7 963 aaKnown RBP11.05□□□□□ -0.64
CLK3-220ENST00000567992 TSHZ2Q9NRE2 1034 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 TUBE1Q9UJT0 475 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 TRPC6Q9Y210 931 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 SAMM50Q9Y512 469 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 COL1A2P08123 1366 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 GBF1Q92538 1859 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 CDH23Q9H251 3354 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 LOXHD1Q8IVV2 1947 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 MYH15Q9Y2K3 1946 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 HBP1O60381 514 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 NBNO60934 754 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 CAND2O75155 1236 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 CXCL10P02778 98 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 OATP04181 439 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 GNAT1P11488 350 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 ATP2B1P20020 1258 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 MCM7P33993 719 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 RFC2P35250 354 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 THPOP40225 353 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 FXR1P51114 621 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLK3-220ENST00000567992 IGBP1P78318 339 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 PRKCEQ02156 737 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 ORC2Q13416 577 aaPredicted RBP11.04□□□□□ -0.64
CLK3-220ENST00000567992 CALCRLQ16602 461 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 TCTN1Q2MV58 587 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 LRIT3Q3SXY7 679 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 TTC38Q5R3I4 469 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 PSRC1Q6PGN9 363 aaPredicted RBP11.04□□□□□ -0.64
CLK3-220ENST00000567992 RPAINQ86UA6 219 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 SLFN12Q8IYM2 578 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 C4orf32Q8N8J7 132 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 BBXQ8WY36 941 aaPredicted RBP11.04□□□□□ -0.64
CLK3-220ENST00000567992 OSBPL7Q9BZF2 842 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 WRAP73Q9P2S5 460 aaPredicted RBP11.04□□□□□ -0.64
CLK3-220ENST00000567992 TCEAL9Q9UHQ7 104 aa11.04□□□□□ -0.64
CLK3-220ENST00000567992 CHD7Q9P2D1 2997 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 MICAL3Q7RTP6 2002 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 EVPLQ92817 2033 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 TMEM150BA6NC51 233 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 RRN3P2A6NIE6 340 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 C22orf31O95567 290 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 MGAT3Q09327 533 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 GNL2Q13823 731 aaKnown RBP11.03□□□□□ -0.64
CLK3-220ENST00000567992 ZNF174Q15697 407 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 ZNF484Q5JVG2 852 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 FAM26DQ5JW98 314 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 LARP1BQ659C4 914 aaKnown RBP11.03□□□□□ -0.64
CLK3-220ENST00000567992 TAF2Q6P1X5 1199 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 MTHFD1LQ6UB35 978 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 ZNF365Q70YC5 407 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 LINC01465Q8N7H1 131 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 RETREG2Q8NC44 543 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 BANK1Q8NDB2 785 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 FAM167AQ96KS9 214 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 CEP89Q96ST8 783 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 CXXC1Q9P0U4 656 aaPredicted RBP11.03□□□□□ -0.64
CLK3-220ENST00000567992 PCDHB6Q9Y5E3 794 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 PCDHA2Q9Y5H9 948 aa11.03□□□□□ -0.64
CLK3-220ENST00000567992 POTEMA6NI47 508 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 RSPH10B2B2RC85 870 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 H3BQV1 296 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 CHRNA1P02708 482 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 PFKMP08237 780 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 CTSHP09668 335 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 OR52Z1P0C646 297 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 RSPH10BP0C881 870 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 SYT1P21579 422 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 TXKP42681 527 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 MKRN4PQ13434 485 aaPredicted RBP11.02□□□□□ -0.65
CLK3-220ENST00000567992 EPHA7Q15375 998 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 TARBP2Q15633 366 aaKnown RBP11.02□□□□□ -0.65
CLK3-220ENST00000567992 MCTP1Q6DN14 999 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 NCAPH2Q6IBW4 605 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 ANO5Q75V66 913 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 DEFB128Q7Z7B8 93 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 DNAJB3Q8WWF6 145 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 HERVK_113Q902F9 699 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 RNPC3Q96LT9 517 aaKnown RBP11.02□□□□□ -0.65
CLK3-220ENST00000567992 TTC12Q9H892 705 aaPredicted RBP11.02□□□□□ -0.65
CLK3-220ENST00000567992 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.02□□□□□ -0.65
CLK3-220ENST00000567992 FOXD4L1Q9NU39 408 aa11.02□□□□□ -0.65
CLK3-220ENST00000567992 NOL7Q9UMY1 257 aaKnown RBP11.02□□□□□ -0.65
CLK3-220ENST00000567992 SMIM35A0A1B0GVV1 85 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 BAG4O95429 457 aaKnown RBP11.01□□□□□ -0.65
CLK3-220ENST00000567992 KLRC1P26715 233 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 QARSP47897 775 aaKnown RBP11.01□□□□□ -0.65
CLK3-220ENST00000567992 PSMC5P62195 406 aa11.01□□□□□ -0.65
CLK3-220ENST00000567992 FAM109BQ6ICB4 259 aaPredicted RBP11.01□□□□□ -0.65
CLK3-220ENST00000567992 TRMT1LQ7Z2T5 733 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms