RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 DNAJB3Q8WWF6 145 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 BBXQ8WY36 941 aaPredicted RBP21.15■□□□□ 0.98
CLN3-227ENST00000567495 UIMC1Q96RL1 719 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 GAS2L1Q99501 681 aaPredicted RBP21.15■□□□□ 0.98
CLN3-227ENST00000567495 ZBED2Q9BTP6 218 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 DISC1Q9NRI5 854 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 CEP131Q9UPN4 1083 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 SQORQ9Y6N5 450 aa21.15■□□□□ 0.98
CLN3-227ENST00000567495 DOCK5Q9H7D0 1870 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 SMIM35A0A1B0GVV1 85 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 M0QZ92 97 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 LARGE1O95461 756 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 FDPSP14324 419 aaKnown RBP21.14■□□□□ 0.97
CLN3-227ENST00000567495 MYOGP15173 224 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 MRPS6P82932 125 aaKnown RBP21.14■□□□□ 0.97
CLN3-227ENST00000567495 INF2Q27J81 1249 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 PPP4R3AQ6IN85 833 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 NEK8Q86SG6 692 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 USP38Q8NB14 1042 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 NSUN7Q8NE18 718 aaKnown RBP21.14■□□□□ 0.97
CLN3-227ENST00000567495 IFIH1Q9BYX4 1025 aaKnown RBP21.14■□□□□ 0.97
CLN3-227ENST00000567495 DDX25Q9UHL0 483 aaKnown RBP21.14■□□□□ 0.97
CLN3-227ENST00000567495 TET1Q8NFU7 2136 aa21.14■□□□□ 0.97
CLN3-227ENST00000567495 SCN5AQ14524 2016 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 GJB5O95377 273 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 TDP2O95551 362 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 CA3P07451 260 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 RBM25P49756 843 aaKnown RBP21.13■□□□□ 0.97
CLN3-227ENST00000567495 MGAT3Q09327 533 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 MKRN4PQ13434 485 aaPredicted RBP21.13■□□□□ 0.97
CLN3-227ENST00000567495 TRIM29Q14134 588 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 TCTN1Q2MV58 587 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 MTHFD1LQ6UB35 978 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 MAFAQ8NHW3 353 aaPredicted RBP21.13■□□□□ 0.97
CLN3-227ENST00000567495 ZSCAN31Q96LW9 406 aaPredicted RBP21.13■□□□□ 0.97
CLN3-227ENST00000567495 FAM20AQ96MK3 541 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 RAD9AQ99638 391 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 FAM49AQ9H0Q0 323 aaPredicted RBP21.13■□□□□ 0.97
CLN3-227ENST00000567495 UPF2Q9HAU5 1272 aaKnown RBP21.13■□□□□ 0.97
CLN3-227ENST00000567495 GABBR1Q9UBS5 961 aa21.13■□□□□ 0.97
CLN3-227ENST00000567495 PSMD10O75832 226 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 KLRC1P26715 233 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 KRT2P35908 639 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 DEFB103AP81534 67 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 LETM2Q2VYF4 491 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 SLC17A8Q8NDX2 589 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 ETNPPLQ8TBG4 499 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 LLPHQ9BRT6 129 aaKnown RBP21.12■□□□□ 0.97
CLN3-227ENST00000567495 PRDM12Q9H4Q4 367 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 NRBP2Q9NSY0 501 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 CDY2AQ9Y6F7 541 aa21.12■□□□□ 0.97
CLN3-227ENST00000567495 IGSF9BQ9UPX0 1349 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 COL6A3P12111 3177 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 MAGEB2O15479 319 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 GHRP10912 638 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 ATP4AP20648 1035 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 FBXO47Q5MNV8 452 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 TSHZ1Q6ZSZ6 1077 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 PIK3AP1Q6ZUJ8 805 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 ZNF710Q8N1W2 664 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 TRAPPC12Q8WVT3 735 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 UNC45AQ9H3U1 944 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 SH2B1Q9NRF2 756 aaPredicted RBP21.11■□□□□ 0.97
CLN3-227ENST00000567495 GJB4Q9NTQ9 266 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 TRPV2Q9Y5S1 764 aa21.11■□□□□ 0.97
CLN3-227ENST00000567495 KDM3AQ9Y4C1 1321 aa21.1■□□□□ 0.97
CLN3-227ENST00000567495 TBX3O15119 743 aa21.1■□□□□ 0.97
CLN3-227ENST00000567495 TAP1Q03518 808 aa21.1■□□□□ 0.97
CLN3-227ENST00000567495 LPIN1Q14693 890 aa21.1■□□□□ 0.97
CLN3-227ENST00000567495 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.1■□□□□ 0.97
CLN3-227ENST00000567495 MIER3Q7Z3K6 550 aa21.1■□□□□ 0.97
CLN3-227ENST00000567495 MYOCDQ8IZQ8 938 aa21.1■□□□□ 0.97
CLN3-227ENST00000567495 OXER1Q8TDS5 423 aa21.1■□□□□ 0.97
CLN3-227ENST00000567495 KIF2CQ99661 725 aa21.1■□□□□ 0.97
CLN3-227ENST00000567495 CELF4Q9BZC1 486 aaKnown RBP21.1■□□□□ 0.97
CLN3-227ENST00000567495 INSL6Q9Y581 213 aa21.1■□□□□ 0.97
CLN3-227ENST00000567495 ZBTB42B2RXF5 422 aa21.09■□□□□ 0.97
CLN3-227ENST00000567495 CHMP2AO43633 222 aa21.09■□□□□ 0.97
CLN3-227ENST00000567495 JAK2O60674 1132 aa21.09■□□□□ 0.97
CLN3-227ENST00000567495 MMP1P03956 469 aa21.09■□□□□ 0.97
CLN3-227ENST00000567495 B3GNT9Q6UX72 402 aa21.09■□□□□ 0.97
CLN3-227ENST00000567495 KIAA0319LQ8IZA0 1049 aa21.09■□□□□ 0.97
CLN3-227ENST00000567495 KCNMB3Q9NPA1 279 aa21.09■□□□□ 0.97
CLN3-227ENST00000567495 KAT6AQ92794 2004 aa21.09■□□□□ 0.97
CLN3-227ENST00000567495 CCNT1O60563 726 aaKnown RBP21.08■□□□□ 0.97
CLN3-227ENST00000567495 C22orf31O95567 290 aa21.08■□□□□ 0.97
CLN3-227ENST00000567495 OATP04181 439 aa21.08■□□□□ 0.97
CLN3-227ENST00000567495 HMGN5P82970 282 aaKnown RBP21.08■□□□□ 0.97
CLN3-227ENST00000567495 RABEP1Q15276 862 aa21.08■□□□□ 0.97
CLN3-227ENST00000567495 SAFBQ15424 915 aaKnown RBP eCLIP21.08■□□□□ 0.97
CLN3-227ENST00000567495 TOP1MTQ969P6 601 aa21.08■□□□□ 0.97
CLN3-227ENST00000567495 ZBTB10Q96DT7 871 aa21.08■□□□□ 0.97
CLN3-227ENST00000567495 FTHL17Q9BXU8 183 aa21.08■□□□□ 0.97
CLN3-227ENST00000567495 OSBPL7Q9BZF2 842 aa21.08■□□□□ 0.97
CLN3-227ENST00000567495 SLC37A4O43826 429 aa21.07■□□□□ 0.96
CLN3-227ENST00000567495 MARCH6O60337 910 aa21.07■□□□□ 0.96
CLN3-227ENST00000567495 TMOD1P28289 359 aa21.07■□□□□ 0.96
CLN3-227ENST00000567495 PRKCEQ02156 737 aa21.07■□□□□ 0.96
CLN3-227ENST00000567495 PPP2R5CQ13362 524 aa21.07■□□□□ 0.96
CLN3-227ENST00000567495 ODR4Q5SWX8 454 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms