RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 HINFPQ9BQA5 517 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 TLR10Q9BXR5 811 aa14.55□□□□□ -0.08
VPS4A-204ENST00000566354 SSC5DA1L4H1 1573 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 POTECB2RU33 542 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 ADM5C9JUS6 153 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 INPP5BP32019 993 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 CXCR5P32302 372 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 SLC7A5Q01650 507 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 EHHADHQ08426 723 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 NNTQ13423 1086 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 CFAP221Q4G0U5 840 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 C8orf74Q6P047 294 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.54□□□□□ -0.08
VPS4A-204ENST00000566354 KCTD1Q719H9 257 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 RAD54LQ92698 747 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 SYN2Q92777 582 aaPredicted RBP14.54□□□□□ -0.08
VPS4A-204ENST00000566354 PIGSQ96S52 555 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 PITPNM2Q9BZ72 1349 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 GLIS2Q9BZE0 524 aaPredicted RBP14.54□□□□□ -0.08
VPS4A-204ENST00000566354 PLEKHA4Q9H4M7 779 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 VAT1LQ9HCJ6 419 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 LUC7LQ9NQ29 371 aaKnown RBP14.54□□□□□ -0.08
VPS4A-204ENST00000566354 SALL4Q9UJQ4 1053 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 F5H6K3 240 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 HSF2BPO75031 334 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 CALRP27797 417 aaKnown RBP14.54□□□□□ -0.08
VPS4A-204ENST00000566354 GFPT1Q06210 699 aaPredicted RBP14.54□□□□□ -0.08
VPS4A-204ENST00000566354 KLRC3Q07444 240 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 ZNF543Q08ER8 600 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 KLHDC7AQ5VTJ3 777 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 KRT79Q5XKE5 535 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 HGSNATQ68CP4 663 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 TTBK2Q6IQ55 1244 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 DCPSQ96C86 337 aaKnown RBP14.54□□□□□ -0.08
VPS4A-204ENST00000566354 RUFY1Q96T51 708 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 RIOX1Q9H6W3 641 aa14.54□□□□□ -0.08
VPS4A-204ENST00000566354 FKBP3Q00688 224 aaKnown RBP14.53□□□□□ -0.08
VPS4A-204ENST00000566354 TTC31Q49AM3 519 aaPredicted RBP14.53□□□□□ -0.08
VPS4A-204ENST00000566354 SLC9C1Q4G0N8 1177 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 ASPRV1Q53RT3 343 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 SLFN13Q68D06 897 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 IFT20Q8IY31 132 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 DDX12PQ92771 950 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 MTMR8Q96EF0 704 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 PSMB7Q99436 277 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 TMEM260Q9NX78 707 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 DONSONQ9NYP3 566 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 CEP72Q9P209 647 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 NDUFB10O96000 172 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 ASNSP08243 561 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 SLC16A2P36021 539 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 SSR1P43307 286 aaKnown RBP14.53□□□□□ -0.08
VPS4A-204ENST00000566354 NOP2P46087 812 aaKnown RBP14.53□□□□□ -0.08
VPS4A-204ENST00000566354 GTF2A1P52655 376 aaPredicted RBP14.53□□□□□ -0.08
VPS4A-204ENST00000566354 PRKG1Q13976 671 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 EAPPQ56P03 285 aaPredicted RBP14.53□□□□□ -0.08
VPS4A-204ENST00000566354 KIAA1755Q5JYT7 1200 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 DCAF15Q66K64 600 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 USP50Q70EL3 339 aaPredicted RBP14.53□□□□□ -0.08
VPS4A-204ENST00000566354 SPICE1Q8N0Z3 855 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 ANKRD13CQ8N6S4 541 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 TANGO6Q9C0B7 1094 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 TAF1DQ9H5J8 278 aaPredicted RBP14.53□□□□□ -0.08
VPS4A-204ENST00000566354 RBM12Q9NTZ6 932 aaKnown RBP14.53□□□□□ -0.08
VPS4A-204ENST00000566354 PPP2R3BQ9Y5P8 575 aa14.53□□□□□ -0.08
VPS4A-204ENST00000566354 SCN4AP35499 1836 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 A0A087WUV0 522 aaPredicted RBP14.52□□□□□ -0.08
VPS4A-204ENST00000566354 LOC102724159A0A0B4J2E5 919 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 EBAG9O00559 213 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 EIF3HO15372 352 aaKnown RBP eCLIP14.52□□□□□ -0.08
VPS4A-204ENST00000566354 NCK2O43639 380 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 SERPING1P05155 500 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 SLC1A4P43007 532 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 NAP1L1P55209 391 aaKnown RBP14.52□□□□□ -0.08
VPS4A-204ENST00000566354 KCNMA1Q12791 1236 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 PWP2Q15269 919 aaKnown RBP14.52□□□□□ -0.08
VPS4A-204ENST00000566354 ZYXQ15942 572 aaKnown RBP14.52□□□□□ -0.08
VPS4A-204ENST00000566354 TDRD12Q587J7 1177 aaKnown RBP14.52□□□□□ -0.08
VPS4A-204ENST00000566354 SULF1Q8IWU6 871 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 MYOCDQ8IZQ8 938 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 SNX29Q8TEQ0 813 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 ZKSCAN4Q969J2 545 aaPredicted RBP14.52□□□□□ -0.08
VPS4A-204ENST00000566354 WRNIP1Q96S55 665 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 ZNF341Q9BYN7 854 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 ARHGEF10LQ9HCE6 1279 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 COL4A3BPQ9Y5P4 624 aa14.52□□□□□ -0.08
VPS4A-204ENST00000566354 SLC37A4O43826 429 aa14.52□□□□□ -0.09
VPS4A-204ENST00000566354 CTNND1O60716 968 aaKnown RBP14.52□□□□□ -0.09
VPS4A-204ENST00000566354 ADCY7P51828 1080 aa14.52□□□□□ -0.09
VPS4A-204ENST00000566354 SKOR1P84550 965 aa14.52□□□□□ -0.09
VPS4A-204ENST00000566354 TMEM119Q4V9L6 283 aa14.52□□□□□ -0.09
VPS4A-204ENST00000566354 SFMBT2Q5VUG0 894 aa14.52□□□□□ -0.09
VPS4A-204ENST00000566354 IFNLR1Q8IU57 520 aaPredicted RBP14.52□□□□□ -0.09
VPS4A-204ENST00000566354 GMCL1P1Q8NEA9 526 aa14.52□□□□□ -0.09
VPS4A-204ENST00000566354 SMARCAL1Q9NZC9 954 aa14.52□□□□□ -0.09
VPS4A-204ENST00000566354 TMX2Q9Y320 296 aa14.52□□□□□ -0.09
VPS4A-204ENST00000566354 SH3BP1Q9Y3L3 701 aa14.52□□□□□ -0.09
VPS4A-204ENST00000566354 BUB1O43683 1085 aa14.51□□□□□ -0.09
VPS4A-204ENST00000566354 CCT5P48643 541 aa14.51□□□□□ -0.09
VPS4A-204ENST00000566354 APBA1Q02410 837 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms