RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 C1QTNF1Q9BXJ1 281 aa16.96■□□□□ 0.3
CLN3-222ENST00000566083 TCF20Q9UGU0 1960 aaKnown RBP16.95■□□□□ 0.3
CLN3-222ENST00000566083 KDM3AQ9Y4C1 1321 aa16.95■□□□□ 0.3
CLN3-222ENST00000566083 TTC3P53804 2025 aa16.95■□□□□ 0.3
CLN3-222ENST00000566083 COL1A2P08123 1366 aa16.95■□□□□ 0.3
CLN3-222ENST00000566083 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.95■□□□□ 0.3
CLN3-222ENST00000566083 C5orf67F2Z3F1 127 aa16.95■□□□□ 0.3
CLN3-222ENST00000566083 IPO5O00410 1097 aaKnown RBP16.95■□□□□ 0.3
CLN3-222ENST00000566083 APOBRQ0VD83 1088 aa16.95■□□□□ 0.3
CLN3-222ENST00000566083 ITGB3BPQ13352 177 aaPredicted RBP16.95■□□□□ 0.3
CLN3-222ENST00000566083 PUS10Q3MIT2 529 aaKnown RBP16.95■□□□□ 0.3
CLN3-222ENST00000566083 RNF26Q9BY78 433 aaPredicted RBP16.95■□□□□ 0.3
CLN3-222ENST00000566083 AGXT2Q9BYV1 514 aa16.95■□□□□ 0.3
CLN3-222ENST00000566083 FAM49AQ9H0Q0 323 aaPredicted RBP16.95■□□□□ 0.3
CLN3-222ENST00000566083 LMAN2LQ9H0V9 348 aa16.95■□□□□ 0.3
CLN3-222ENST00000566083 UBE2ZQ9H832 354 aaPredicted RBP16.95■□□□□ 0.3
CLN3-222ENST00000566083 TRPV2Q9Y5S1 764 aa16.95■□□□□ 0.3
CLN3-222ENST00000566083 SNX14Q9Y5W7 946 aa16.95■□□□□ 0.3
CLN3-222ENST00000566083 COL4A4P53420 1690 aaPredicted RBP16.94■□□□□ 0.3
CLN3-222ENST00000566083 STAG3L1P0CL83 205 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 RPS6KB1P23443 525 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 ZNF484Q5JVG2 852 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 JAKMIP3Q5VZ66 844 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 ABHD15Q6UXT9 468 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 SKAP1Q86WV1 359 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 SMAP1Q8IYB5 467 aaPredicted RBP16.94■□□□□ 0.3
CLN3-222ENST00000566083 ZNF710Q8N1W2 664 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 ATP8B4Q8TF62 1192 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 CRYGNQ8WXF5 182 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 ZNF577Q9BSK1 485 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 PLVAPQ9BX97 442 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 CELF4Q9BZC1 486 aaKnown RBP16.94■□□□□ 0.3
CLN3-222ENST00000566083 OSBPL7Q9BZF2 842 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 ZNF302Q9NR11 478 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 TMEM260Q9NX78 707 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 ADGRA3Q8IWK6 1321 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 IGSF9BQ9UPX0 1349 aa16.94■□□□□ 0.3
CLN3-222ENST00000566083 FAM86B1E9PN63 330 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 FAM86B2P0C5J1 330 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 BMPR1AP36894 532 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 KRT76Q01546 638 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 PAK2Q13177 524 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 LEXMQ3ZCV2 418 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 ZNF746Q6NUN9 644 aaPredicted RBP16.93■□□□□ 0.3
CLN3-222ENST00000566083 PDXDC2PQ6P474 469 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 MTHFD1LQ6UB35 978 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 BANK1Q8NDB2 785 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 CLP1Q92989 425 aaKnown RBP16.93■□□□□ 0.3
CLN3-222ENST00000566083 C22orf23Q9BZE7 217 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 SH3GLB2Q9NR46 395 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 CEP131Q9UPN4 1083 aa16.93■□□□□ 0.3
CLN3-222ENST00000566083 MYO7AQ13402 2215 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 IGLV3-22A0A075B6J6 115 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 IFNAR1P17181 557 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 KLRC1P26715 233 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 CD52P31358 61 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 CIITAP33076 1130 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 CTNNB1P35222 781 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 EVCP57679 992 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 BTG3Q14201 252 aaPredicted RBP16.92■□□□□ 0.3
CLN3-222ENST00000566083 NAALADL2Q58DX5 795 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 NPAS4Q8IUM7 802 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 FAM177A1Q8N128 213 aaPredicted RBP16.92■□□□□ 0.3
CLN3-222ENST00000566083 BBXQ8WY36 941 aaPredicted RBP16.92■□□□□ 0.3
CLN3-222ENST00000566083 NSUN3Q9H649 340 aaKnown RBP16.92■□□□□ 0.3
CLN3-222ENST00000566083 FAM50BQ9Y247 325 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 MUC3AQ02505 3323 aa16.92■□□□□ 0.3
CLN3-222ENST00000566083 DDX39AO00148 427 aaKnown RBP16.91■□□□□ 0.3
CLN3-222ENST00000566083 DHX15O43143 795 aaKnown RBP16.91■□□□□ 0.3
CLN3-222ENST00000566083 DGKIO75912 1065 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 CCNE2O96020 404 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 PSAPP07602 524 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 PKN1Q16512 942 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 SWSAP1Q6NVH7 229 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 CKAP2LQ8IYA6 745 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 TRIM22Q8IYM9 498 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 CMTR2Q8IYT2 770 aaKnown RBP16.91■□□□□ 0.3
CLN3-222ENST00000566083 ZNF689Q96CS4 500 aaPredicted RBP16.91■□□□□ 0.3
CLN3-222ENST00000566083 FAM167AQ96KS9 214 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 NECAB3Q96P71 396 aaPredicted RBP16.91■□□□□ 0.3
CLN3-222ENST00000566083 AGO3Q9H9G7 860 aaKnown RBP16.91■□□□□ 0.3
CLN3-222ENST00000566083 RC3H2Q9HBD1 1191 aaKnown RBP16.91■□□□□ 0.3
CLN3-222ENST00000566083 PADI3Q9ULW8 664 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 PCDHA10Q9Y5I2 948 aa16.91■□□□□ 0.3
CLN3-222ENST00000566083 RALGAPA2Q2PPJ7 1873 aa16.9■□□□□ 0.3
CLN3-222ENST00000566083 CPA1P15085 419 aa16.9■□□□□ 0.3
CLN3-222ENST00000566083 KCNA5P22460 613 aa16.9■□□□□ 0.3
CLN3-222ENST00000566083 USP11P51784 963 aa16.9■□□□□ 0.3
CLN3-222ENST00000566083 CCDC60Q8IWA6 550 aaPredicted RBP16.9■□□□□ 0.3
CLN3-222ENST00000566083 P2RX5Q93086 422 aa16.9■□□□□ 0.3
CLN3-222ENST00000566083 PPP2R3CQ969Q6 453 aa16.9■□□□□ 0.3
CLN3-222ENST00000566083 PABPC5Q96DU9 382 aaKnown RBP16.9■□□□□ 0.3
CLN3-222ENST00000566083 MAFBQ9Y5Q3 323 aaPredicted RBP16.9■□□□□ 0.3
CLN3-222ENST00000566083 GPR182O15218 404 aa16.89■□□□□ 0.29
CLN3-222ENST00000566083 MAGEB2O15479 319 aa16.89■□□□□ 0.29
CLN3-222ENST00000566083 PDIA3P30101 505 aaKnown RBP16.89■□□□□ 0.29
CLN3-222ENST00000566083 NTRK3Q16288 839 aa16.89■□□□□ 0.29
CLN3-222ENST00000566083 PRR16Q569H4 304 aa16.89■□□□□ 0.29
CLN3-222ENST00000566083 CPLX2Q6PUV4 134 aaKnown RBP16.89■□□□□ 0.29
CLN3-222ENST00000566083 RUFY3Q7L099 469 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms