RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PSAPP07602 524 aa23.49■■□□□ 1.35
CLN3-219ENST00000565778 KLRC1P26715 233 aa23.49■■□□□ 1.35
CLN3-219ENST00000565778 MRPS6P82932 125 aaKnown RBP23.49■■□□□ 1.35
CLN3-219ENST00000565778 KRT76Q01546 638 aa23.49■■□□□ 1.35
CLN3-219ENST00000565778 MKRN4PQ13434 485 aaPredicted RBP23.49■■□□□ 1.35
CLN3-219ENST00000565778 MTHFD1LQ6UB35 978 aa23.49■■□□□ 1.35
CLN3-219ENST00000565778 TRMT1LQ7Z2T5 733 aaKnown RBP23.49■■□□□ 1.35
CLN3-219ENST00000565778 SPRED2Q7Z698 418 aa23.49■■□□□ 1.35
CLN3-219ENST00000565778 ATP8B4Q8TF62 1192 aa23.49■■□□□ 1.35
CLN3-219ENST00000565778 TOP1MTQ969P6 601 aa23.49■■□□□ 1.35
CLN3-219ENST00000565778 PCDHA10Q9Y5I2 948 aa23.49■■□□□ 1.35
CLN3-219ENST00000565778 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.48■■□□□ 1.35
CLN3-219ENST00000565778 EDIL3O43854 480 aa23.48■■□□□ 1.35
CLN3-219ENST00000565778 PFKFB2O60825 505 aa23.48■■□□□ 1.35
CLN3-219ENST00000565778 AK2P54819 239 aa23.48■■□□□ 1.35
CLN3-219ENST00000565778 TMEM62Q0P6H9 643 aa23.48■■□□□ 1.35
CLN3-219ENST00000565778 LPIN1Q14693 890 aa23.48■■□□□ 1.35
CLN3-219ENST00000565778 FBXO47Q5MNV8 452 aa23.48■■□□□ 1.35
CLN3-219ENST00000565778 GALNT17Q6IS24 598 aa23.48■■□□□ 1.35
CLN3-219ENST00000565778 SMAP1Q8IYB5 467 aaPredicted RBP23.48■■□□□ 1.35
CLN3-219ENST00000565778 NME8Q8N427 588 aa23.48■■□□□ 1.35
CLN3-219ENST00000565778 TGS1Q96RS0 853 aaKnown RBP23.48■■□□□ 1.35
CLN3-219ENST00000565778 MTUS1Q9ULD2 1270 aa23.48■■□□□ 1.35
CLN3-219ENST00000565778 SMIM35A0A1B0GVV1 85 aa23.47■■□□□ 1.35
CLN3-219ENST00000565778 LINC01553A4QN01 128 aa23.47■■□□□ 1.35
CLN3-219ENST00000565778 MSH4O15457 936 aa23.47■■□□□ 1.35
CLN3-219ENST00000565778 ZNF484Q5JVG2 852 aa23.47■■□□□ 1.35
CLN3-219ENST00000565778 FAM177A1Q8N128 213 aaPredicted RBP23.47■■□□□ 1.35
CLN3-219ENST00000565778 LENG9Q96B70 501 aa23.47■■□□□ 1.35
CLN3-219ENST00000565778 YME1L1Q96TA2 773 aa23.47■■□□□ 1.35
CLN3-219ENST00000565778 COL25A1Q9BXS0 654 aaPredicted RBP23.47■■□□□ 1.35
CLN3-219ENST00000565778 KCNJ14Q9UNX9 436 aa23.47■■□□□ 1.35
CLN3-219ENST00000565778 MAFBQ9Y5Q3 323 aaPredicted RBP23.47■■□□□ 1.35
CLN3-219ENST00000565778 MTCH2Q9Y6C9 303 aa23.47■■□□□ 1.35
CLN3-219ENST00000565778 DTNBO60941 627 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 XBP1P17861 261 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 POU3F3P20264 500 aaPredicted RBP23.46■■□□□ 1.35
CLN3-219ENST00000565778 ATP4AP20648 1035 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 ERVK-21P61565 698 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 HTRA4P83105 476 aaPredicted RBP23.46■■□□□ 1.35
CLN3-219ENST00000565778 GRB10Q13322 594 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 TSHZ1Q6ZSZ6 1077 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 UNC80Q8N2C7 3258 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 DAGLBQ8NCG7 672 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 CELF4Q9BZC1 486 aaKnown RBP23.46■■□□□ 1.35
CLN3-219ENST00000565778 TSPYL2Q9H2G4 693 aaPredicted RBP23.46■■□□□ 1.35
CLN3-219ENST00000565778 GABBR1Q9UBS5 961 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 TRPV2Q9Y5S1 764 aa23.46■■□□□ 1.35
CLN3-219ENST00000565778 PRUNE2Q8WUY3 3088 aa23.45■■□□□ 1.34
CLN3-219ENST00000565778 CHD7Q9P2D1 2997 aa23.45■■□□□ 1.34
CLN3-219ENST00000565778 M0R2N6 131 aa23.45■■□□□ 1.34
CLN3-219ENST00000565778 ENPP3O14638 875 aa23.45■■□□□ 1.34
CLN3-219ENST00000565778 GAS7O60861 476 aa23.45■■□□□ 1.34
CLN3-219ENST00000565778 NONOQ15233 471 aaKnown RBP eCLIP23.45■■□□□ 1.34
CLN3-219ENST00000565778 SKIV2LQ15477 1246 aaKnown RBP23.45■■□□□ 1.34
CLN3-219ENST00000565778 BBXQ8WY36 941 aaPredicted RBP23.45■■□□□ 1.34
CLN3-219ENST00000565778 RIT2Q99578 217 aa23.45■■□□□ 1.34
CLN3-219ENST00000565778 PTPRSQ13332 1948 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 WDR64B1ANS9 1081 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 CD52P31358 61 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 NEK4P51957 841 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 Q4G0T1 1027 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 LRCH2Q5VUJ6 765 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 KRT40Q6A162 431 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 KRT25Q7Z3Z0 450 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 TEKT3Q9BXF9 490 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 AGO3Q9H9G7 860 aaKnown RBP23.44■■□□□ 1.34
CLN3-219ENST00000565778 SUGCTQ9HAC7 445 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 DISC1Q9NRI5 854 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 SQORQ9Y6N5 450 aa23.44■■□□□ 1.34
CLN3-219ENST00000565778 COL1A2P08123 1366 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 CHMP2AO43633 222 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 SEC24BO95487 1268 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 NPY5RQ15761 445 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 NECAB1Q8N987 351 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 SLC5A5Q92911 643 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 GJA10Q969M2 543 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 PHF20Q9BVI0 1012 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 NRBP2Q9NSY0 501 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 THEGQ9P2T0 379 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 ORC3Q9UBD5 711 aaPredicted RBP23.43■■□□□ 1.34
CLN3-219ENST00000565778 GINS2Q9Y248 185 aa23.43■■□□□ 1.34
CLN3-219ENST00000565778 CYP3A7-CYP3A51PA0A087WV96 503 aa23.42■■□□□ 1.34
CLN3-219ENST00000565778 TDP2O95551 362 aa23.42■■□□□ 1.34
CLN3-219ENST00000565778 CYP3A7P24462 503 aa23.42■■□□□ 1.34
CLN3-219ENST00000565778 KIAA0319LQ8IZA0 1049 aa23.42■■□□□ 1.34
CLN3-219ENST00000565778 SP7Q8TDD2 431 aaPredicted RBP23.42■■□□□ 1.34
CLN3-219ENST00000565778 GDPD5Q8WTR4 605 aa23.42■■□□□ 1.34
CLN3-219ENST00000565778 ATXN2LQ8WWM7 1075 aaKnown RBP23.42■■□□□ 1.34
CLN3-219ENST00000565778 WASF1Q92558 559 aa23.42■■□□□ 1.34
CLN3-219ENST00000565778 SYMPKQ92797 1274 aaKnown RBP23.42■■□□□ 1.34
CLN3-219ENST00000565778 IL17RAQ96F46 866 aa23.42■■□□□ 1.34
CLN3-219ENST00000565778 C17orf80Q9BSJ5 609 aa23.42■■□□□ 1.34
CLN3-219ENST00000565778 PADI3Q9ULW8 664 aa23.42■■□□□ 1.34
CLN3-219ENST00000565778 STK36Q9NRP7 1315 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 CCDC194A0A1B0GVG4 234 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 ZBTB42B2RXF5 422 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 LPXNO60711 386 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 CTDNEP1O95476 244 aa23.41■■□□□ 1.34
CLN3-219ENST00000565778 SFNP31947 248 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms