RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ZNF286BP0CG31 522 aa19.48■□□□□ 0.71
CLN3-217ENST00000565354 CYP3A7P24462 503 aa19.48■□□□□ 0.71
CLN3-217ENST00000565354 ITGB3BPQ13352 177 aaPredicted RBP19.48■□□□□ 0.71
CLN3-217ENST00000565354 PPP4R3AQ6IN85 833 aa19.48■□□□□ 0.71
CLN3-217ENST00000565354 NOSTRINQ8IVI9 506 aa19.48■□□□□ 0.71
CLN3-217ENST00000565354 SEPT1Q8WYJ6 367 aa19.48■□□□□ 0.71
CLN3-217ENST00000565354 C11orf16Q9NQ32 467 aa19.48■□□□□ 0.71
CLN3-217ENST00000565354 MSH4O15457 936 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 EDIL3O43854 480 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 LPXNO60711 386 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 GAS7O60861 476 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 BAIAP3O94812 1187 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 BAG4O95429 457 aaKnown RBP19.47■□□□□ 0.71
CLN3-217ENST00000565354 BFSP2Q13515 415 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 BECN1Q14457 450 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 LRCH2Q5VUJ6 765 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 KHSRPQ92945 711 aaKnown RBP eCLIP19.47■□□□□ 0.71
CLN3-217ENST00000565354 LENG9Q96B70 501 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 TEKT3Q9BXF9 490 aa19.47■□□□□ 0.71
CLN3-217ENST00000565354 ZNF215Q9UL58 517 aaPredicted RBP19.47■□□□□ 0.71
CLN3-217ENST00000565354 LGALS2P05162 132 aa19.46■□□□□ 0.71
CLN3-217ENST00000565354 TCF7P36402 384 aaPredicted RBP19.46■□□□□ 0.71
CLN3-217ENST00000565354 PSEN2P49810 448 aa19.46■□□□□ 0.71
CLN3-217ENST00000565354 ACTR2P61160 394 aa19.46■□□□□ 0.71
CLN3-217ENST00000565354 KRT76Q01546 638 aa19.46■□□□□ 0.71
CLN3-217ENST00000565354 PTPN11Q06124 597 aaPredicted RBP19.46■□□□□ 0.71
CLN3-217ENST00000565354 SPRED2Q7Z698 418 aa19.46■□□□□ 0.71
CLN3-217ENST00000565354 PPP1R13LQ8WUF5 828 aa19.46■□□□□ 0.71
CLN3-217ENST00000565354 MBOAT7Q96N66 472 aa19.46■□□□□ 0.71
CLN3-217ENST00000565354 AZI2Q9H6S1 392 aa19.46■□□□□ 0.71
CLN3-217ENST00000565354 SAMM50Q9Y512 469 aa19.46■□□□□ 0.71
CLN3-217ENST00000565354 SLC37A4O43826 429 aa19.45■□□□□ 0.7
CLN3-217ENST00000565354 U2AF2P26368 475 aaKnown RBP eCLIP19.45■□□□□ 0.7
CLN3-217ENST00000565354 KCNJ6P48051 423 aa19.45■□□□□ 0.7
CLN3-217ENST00000565354 MFSD10Q14728 455 aa19.45■□□□□ 0.7
CLN3-217ENST00000565354 SPRYD3Q8NCJ5 442 aa19.45■□□□□ 0.7
CLN3-217ENST00000565354 GLG1Q92896 1179 aa19.45■□□□□ 0.7
CLN3-217ENST00000565354 SLC5A5Q92911 643 aa19.45■□□□□ 0.7
CLN3-217ENST00000565354 RIT2Q99578 217 aa19.45■□□□□ 0.7
CLN3-217ENST00000565354 LMCD1Q9NZU5 365 aa19.45■□□□□ 0.7
CLN3-217ENST00000565354 GSTTP1A0A1W2PQM5 241 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 FAM86C2PA6NEL3 165 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 H3BRB1 525 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 BACH1O14867 736 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 CHMP2AO43633 222 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 NEMFO60524 1076 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 F2P00734 622 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 HOXD8P13378 290 aaPredicted RBP19.44■□□□□ 0.7
CLN3-217ENST00000565354 MCM7P33993 719 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 KIAA0753Q2KHM9 967 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 TTC38Q5R3I4 469 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 ZNF746Q6NUN9 644 aaPredicted RBP19.44■□□□□ 0.7
CLN3-217ENST00000565354 MIS18BP1Q6P0N0 1132 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 POTEDQ86YR6 584 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 C7orf31Q8N865 590 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 FAM20AQ96MK3 541 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 TUT1Q9H6E5 874 aaKnown RBP19.44■□□□□ 0.7
CLN3-217ENST00000565354 NOD1Q9Y239 953 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 TELO2Q9Y4R8 837 aa19.44■□□□□ 0.7
CLN3-217ENST00000565354 LCHNA4D1U4 455 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 PI4K2BG5E9Z4 385 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 DHX15O43143 795 aaKnown RBP19.43■□□□□ 0.7
CLN3-217ENST00000565354 TRAPPC10P48553 1259 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 WDR5P61964 334 aaKnown RBP19.43■□□□□ 0.7
CLN3-217ENST00000565354 CALCRLQ16602 461 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 FAM160B1Q5W0V3 765 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 SMAP1Q8IYB5 467 aaPredicted RBP19.43■□□□□ 0.7
CLN3-217ENST00000565354 SLFN12Q8IYM2 578 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 ETNPPLQ8TBG4 499 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 GDPD5Q8WTR4 605 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 KAT2BQ92831 832 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 GJA10Q969M2 543 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 SMARCAD1Q9H4L7 1026 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 CD320Q9NPF0 282 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 SIP14410 1827 aa19.43■□□□□ 0.7
CLN3-217ENST00000565354 WDR64B1ANS9 1081 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 TBX3O15119 743 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 PSAPP07602 524 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 SYT1P21579 422 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 ZNF174Q15697 407 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 MIER3Q7Z3K6 550 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 TRIM50Q86XT4 487 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 CCDC155Q8N6L0 562 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 CAGE1Q8TC20 777 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 AFAP1L1Q8TED9 768 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 C16orf70Q9BSU1 422 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 ERAP1Q9NZ08 941 aa19.42■□□□□ 0.7
CLN3-217ENST00000565354 CCNE2O96020 404 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 MARK3P27448 753 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 SFNP31947 248 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 JAK3P52333 1124 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 ORC2Q13416 577 aaPredicted RBP19.41■□□□□ 0.7
CLN3-217ENST00000565354 PTGISQ16647 500 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 ZBED2Q9BTP6 218 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 UNC45AQ9H3U1 944 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 KCNMB3Q9NPA1 279 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 ZNF302Q9NR11 478 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 PCDHA10Q9Y5I2 948 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 EMSYQ7Z589 1322 aa19.41■□□□□ 0.7
CLN3-217ENST00000565354 HAS3O00219 553 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms