RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CRISPLD2Q9H0B8 497 aa23.08■■□□□ 1.29
CLN3-212ENST00000564574 KCNH3Q9ULD8 1083 aa23.08■■□□□ 1.29
CLN3-212ENST00000564574 KIAA1024Q9UPX6 916 aa23.08■■□□□ 1.29
CLN3-212ENST00000564574 SCN10AQ9Y5Y9 1956 aa23.08■■□□□ 1.29
CLN3-212ENST00000564574 KBTBD13C9JR72 458 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 H3BRB1 525 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 CABYRO75952 493 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 ZNF286BP0CG31 522 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 ZRSR1Q15695 479 aaKnown RBP23.07■■□□□ 1.28
CLN3-212ENST00000564574 KCNA10Q16322 511 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 ECM1Q16610 540 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 XKR3Q5GH77 459 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 RRAGBQ5VZM2 374 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 POTEGQ6S5H5 508 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 U2AF1L4Q8WU68 220 aaKnown RBP23.07■■□□□ 1.28
CLN3-212ENST00000564574 TMEM106CQ9BVX2 250 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 TUT1Q9H6E5 874 aaKnown RBP23.07■■□□□ 1.28
CLN3-212ENST00000564574 NRBP2Q9NSY0 501 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 DDX19AQ9NUU7 478 aaKnown RBP23.07■■□□□ 1.28
CLN3-212ENST00000564574 STK17AQ9UEE5 414 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 USP25Q9UHP3 1055 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 ARID2Q68CP9 1835 aa23.07■■□□□ 1.28
CLN3-212ENST00000564574 KAT6AQ92794 2004 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 DNM1LO00429 736 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 ZNF862O60290 1169 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 OATP04181 439 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 ASGR1P07306 291 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 PLCG1P19174 1290 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 SYKP43405 635 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 GJA8P48165 433 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 PRKCEQ02156 737 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 TPRNQ4KMQ1 711 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 OTUD6AQ7L8S5 288 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 TRIM50Q86XT4 487 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 CKAP2LQ8IYA6 745 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 IQUBQ8NA54 791 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 ATP8B4Q8TF62 1192 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 BBXQ8WY36 941 aaPredicted RBP23.06■■□□□ 1.28
CLN3-212ENST00000564574 CUEDC2Q9H467 287 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 GOLPH3LQ9H4A5 285 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 ANKEF1Q9NU02 776 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 WRAP73Q9P2S5 460 aaPredicted RBP23.06■■□□□ 1.28
CLN3-212ENST00000564574 DNM3Q9UQ16 869 aa23.06■■□□□ 1.28
CLN3-212ENST00000564574 HAS3O00219 553 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 MYCNP04198 464 aaPredicted RBP23.05■■□□□ 1.28
CLN3-212ENST00000564574 ATP4AP20648 1035 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 STAT6P42226 847 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 PSEN2P49810 448 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 NDUFA8P51970 172 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 FAM160A1Q05DH4 1040 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 PLCB4Q15147 1175 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 PDILTQ8N807 584 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 ANKLE1Q8NAG6 615 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 KAT2BQ92831 832 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 DBR1Q9UK59 544 aaKnown RBP23.05■■□□□ 1.28
CLN3-212ENST00000564574 PPME1Q9Y570 386 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 HTTP42858 3142 aa23.05■■□□□ 1.28
CLN3-212ENST00000564574 A0A087X0B3 334 aa23.04■■□□□ 1.28
CLN3-212ENST00000564574 POLR2DO15514 142 aaKnown RBP23.04■■□□□ 1.28
CLN3-212ENST00000564574 HBP1O60381 514 aa23.04■■□□□ 1.28
CLN3-212ENST00000564574 STBD1O95210 358 aa23.04■■□□□ 1.28
CLN3-212ENST00000564574 EYA4O95677 639 aa23.04■■□□□ 1.28
CLN3-212ENST00000564574 TFRCP02786 760 aaKnown RBP23.04■■□□□ 1.28
CLN3-212ENST00000564574 YWHABP31946 246 aaKnown RBP23.04■■□□□ 1.28
CLN3-212ENST00000564574 ACLYP53396 1101 aa23.04■■□□□ 1.28
CLN3-212ENST00000564574 MFSD10Q14728 455 aa23.04■■□□□ 1.28
CLN3-212ENST00000564574 E2F4Q16254 413 aa23.04■■□□□ 1.28
CLN3-212ENST00000564574 MAGEF1Q9HAY2 307 aa23.04■■□□□ 1.28
CLN3-212ENST00000564574 PHF24Q9UPV7 400 aa23.04■■□□□ 1.28
CLN3-212ENST00000564574 MARK3P27448 753 aa23.03■■□□□ 1.28
CLN3-212ENST00000564574 CXCL17Q6UXB2 119 aa23.03■■□□□ 1.28
CLN3-212ENST00000564574 FMR1NBQ8N0W7 255 aaPredicted RBP23.03■■□□□ 1.28
CLN3-212ENST00000564574 ENGASEQ8NFI3 743 aa23.03■■□□□ 1.28
CLN3-212ENST00000564574 RAD54LQ92698 747 aa23.03■■□□□ 1.28
CLN3-212ENST00000564574 PLIN2Q99541 437 aa23.03■■□□□ 1.28
CLN3-212ENST00000564574 NIFKQ9BYG3 293 aaKnown RBP23.03■■□□□ 1.28
CLN3-212ENST00000564574 PANK2Q9BZ23 570 aa23.03■■□□□ 1.28
CLN3-212ENST00000564574 COL1A2P08123 1366 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 E9PMD0 336 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 MBD3O95983 291 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 KIAA0753Q2KHM9 967 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 ANO5Q75V66 913 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 LARP4BQ92615 738 aaKnown RBP23.02■■□□□ 1.28
CLN3-212ENST00000564574 DHX58Q96C10 678 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 GLT1D1Q96MS3 346 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 CCDC43Q96MW1 224 aaKnown RBP23.02■■□□□ 1.28
CLN3-212ENST00000564574 RNPEPQ9H4A4 650 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 BLOC1S4Q9NUP1 217 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 SEPT9Q9UHD8 586 aaPredicted RBP23.02■■□□□ 1.28
CLN3-212ENST00000564574 TRPC6Q9Y210 931 aa23.02■■□□□ 1.28
CLN3-212ENST00000564574 ZNF202O95125 648 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 LIG1P18858 919 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 PSMC6P62333 389 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 SNW1Q13573 536 aaKnown RBP23.01■■□□□ 1.27
CLN3-212ENST00000564574 NAALADL2Q58DX5 795 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 ZNF484Q5JVG2 852 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 KCNK18Q7Z418 384 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 CEP57L1Q8IYX8 460 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 PIGOQ8TEQ8 1089 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 CCDC34Q96HJ3 373 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms