RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 DEFB118Q96PH6 123 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 NT5C3AQ9H0P0 336 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 RNF208Q9H0X6 261 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 AZI2Q9H6S1 392 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 SPC25Q9HBM1 224 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 TMEM150BA6NC51 233 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 E9PMD0 336 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 ACTN4O43707 911 aaKnown RBP18.55■□□□□ 0.56
VPS4A-202ENST00000562754 ZNF202O95125 648 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 MYL3P08590 195 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 MARK3P27448 753 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 STAT6P42226 847 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 LRRC41Q15345 812 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 BRDTQ58F21 947 aaPredicted RBP18.55■□□□□ 0.56
VPS4A-202ENST00000562754 GNASQ5JWF2 1037 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 PLPPR4Q7Z2D5 763 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 PIGOQ8TEQ8 1089 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 KAT2BQ92831 832 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 GLG1Q92896 1179 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 SMARCAD1Q9H4L7 1026 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 DACT1Q9NYF0 836 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 STK17AQ9UEE5 414 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 SERTAD1Q9UHV2 236 aa18.55■□□□□ 0.56
VPS4A-202ENST00000562754 F2P00734 622 aa18.54■□□□□ 0.56
VPS4A-202ENST00000562754 OATP04181 439 aa18.54■□□□□ 0.56
VPS4A-202ENST00000562754 PURAQ00577 322 aaKnown RBP18.54■□□□□ 0.56
VPS4A-202ENST00000562754 PLCB4Q15147 1175 aa18.54■□□□□ 0.56
VPS4A-202ENST00000562754 LONRF3Q496Y0 759 aa18.54■□□□□ 0.56
VPS4A-202ENST00000562754 RAD54LQ92698 747 aa18.54■□□□□ 0.56
VPS4A-202ENST00000562754 DKC1O60832 514 aaKnown RBP eCLIP18.53■□□□□ 0.56
VPS4A-202ENST00000562754 EYA4O95677 639 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 MBD3O95983 291 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 MYCNP04198 464 aaPredicted RBP18.53■□□□□ 0.56
VPS4A-202ENST00000562754 PTMSP20962 102 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 YWHABP31946 246 aaKnown RBP18.53■□□□□ 0.56
VPS4A-202ENST00000562754 MCM6Q14566 821 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 KCNA10Q16322 511 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 XKR3Q5GH77 459 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 PLA2G4FQ68DD2 849 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 ANO5Q75V66 913 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 TRMT1LQ7Z2T5 733 aaKnown RBP18.53■□□□□ 0.56
VPS4A-202ENST00000562754 RNF180Q86T96 592 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 IQUBQ8NA54 791 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 ATP8B4Q8TF62 1192 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 NACC1Q96RE7 527 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 PYM1Q9BRP8 204 aaKnown RBP18.53■□□□□ 0.56
VPS4A-202ENST00000562754 ERAP1Q9NZ08 941 aa18.53■□□□□ 0.56
VPS4A-202ENST00000562754 H3BRB1 525 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 HAS3O00219 553 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 KPNA6O60684 536 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 SLFN14P0C7P3 912 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 SLC26A2P50443 739 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 CXCL17Q6UXB2 119 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 KRBA2Q6ZNG9 492 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 CKAP2LQ8IYA6 745 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 KCTD17Q8N5Z5 321 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 LARP4BQ92615 738 aaKnown RBP18.52■□□□□ 0.56
VPS4A-202ENST00000562754 FAM167AQ96KS9 214 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 MTRQ99707 1265 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 RNPEPQ9H4A4 650 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 TUT1Q9H6E5 874 aaKnown RBP18.52■□□□□ 0.56
VPS4A-202ENST00000562754 SEPT9Q9UHD8 586 aaPredicted RBP18.52■□□□□ 0.56
VPS4A-202ENST00000562754 USP25Q9UHP3 1055 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 DBR1Q9UK59 544 aaKnown RBP18.52■□□□□ 0.56
VPS4A-202ENST00000562754 ZNF215Q9UL58 517 aaPredicted RBP18.52■□□□□ 0.56
VPS4A-202ENST00000562754 OGDHLQ9ULD0 1010 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 DNM3Q9UQ16 869 aa18.52■□□□□ 0.56
VPS4A-202ENST00000562754 ZEB2O60315 1214 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 KINO60870 393 aaKnown RBP18.51■□□□□ 0.55
VPS4A-202ENST00000562754 ASGR1P07306 291 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 GJB1P08034 283 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 PLA2G4BP0C869 781 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 RARRES1P49788 294 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 PSEN2P49810 448 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 SLC12A3P55017 1021 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 NPEPPSP55786 919 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 MFSD10Q14728 455 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 GRAMD1CQ8IYS0 662 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 PCSK9Q8NBP7 692 aaKnown RBP18.51■□□□□ 0.55
VPS4A-202ENST00000562754 PPP1R13LQ8WUF5 828 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 SH2D3AQ9BRG2 576 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 MTG1Q9BT17 334 aaPredicted RBP18.51■□□□□ 0.55
VPS4A-202ENST00000562754 CRISPLD2Q9H0B8 497 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 BHMT2Q9H2M3 363 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 CUEDC2Q9H467 287 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 ANKEF1Q9NU02 776 aa18.51■□□□□ 0.55
VPS4A-202ENST00000562754 ZBTB42B2RXF5 422 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 XRCC6P12956 609 aaKnown RBP eCLIP18.5■□□□□ 0.55
VPS4A-202ENST00000562754 ACLYP53396 1101 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 DHX8Q14562 1220 aaKnown RBP18.5■□□□□ 0.55
VPS4A-202ENST00000562754 TARBP2Q15633 366 aaKnown RBP18.5■□□□□ 0.55
VPS4A-202ENST00000562754 KIAA0753Q2KHM9 967 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 SH3RF1Q7Z6J0 888 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 ARRDC4Q8NCT1 418 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 CNNM3Q8NE01 707 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 U2AF1L4Q8WU68 220 aaKnown RBP18.5■□□□□ 0.55
VPS4A-202ENST00000562754 BBXQ8WY36 941 aaPredicted RBP18.5■□□□□ 0.55
VPS4A-202ENST00000562754 STAMQ92783 540 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 TIGD1Q96MW7 591 aa18.5■□□□□ 0.55
VPS4A-202ENST00000562754 CEP89Q96ST8 783 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms