RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 INCENPQ9NQS7 918 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 ARHGAP20Q9P2F6 1191 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 ARHGAP28Q9P2N2 729 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 ZFP69BQ9UJL9 534 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 FBXO10Q9UK96 956 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 PTPDC1A2A3K4 754 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 H7C1D1 291 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 FBXO21O94952 628 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 MPIG6BO95866 241 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 GYS2P54840 703 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 GJA9P57773 515 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 OCRLQ01968 901 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 EPHA7Q15375 998 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 CATSPEREQ5SY80 951 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 EGFLAMQ63HQ2 1017 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 CREB3L3Q68CJ9 461 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 PKN3Q6P5Z2 889 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 FRMD5Q7Z6J6 570 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 DHX37Q8IY37 1157 aaKnown RBP4.78□□□□□ -1.64
VPS35-203ENST00000562420 EFHBQ8N7U6 833 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 UBE2Q2Q8WVN8 375 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 ASB15Q8WXK1 588 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 FOXB1Q99853 325 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 SYT3Q9BQG1 590 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 BTBD2Q9BX70 525 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 GALNT8Q9NY28 637 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 RBPJLQ9UBG7 517 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 FTSJ1Q9UET6 329 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 ZKSCAN5Q9Y2L8 839 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 SPO11Q9Y5K1 396 aa4.78□□□□□ -1.64
VPS35-203ENST00000562420 RASSF10A6NK89 507 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 NOBOXO60393 691 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 PDE8AO60658 829 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 GAS7O60861 476 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 CUTAO60888 179 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 KLHL18O94889 574 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 IL18BPO95998 194 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 VIL1P09327 827 aaKnown RBP4.77□□□□□ -1.65
VPS35-203ENST00000562420 IL13P35225 146 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 MLLT6P55198 1093 aaPredicted RBP4.77□□□□□ -1.65
VPS35-203ENST00000562420 KIAA2012Q0VF49 1180 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 DHCR24Q15392 516 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 ZNF174Q15697 407 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 ZFYVE27Q5T4F4 411 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 GPR158Q5T848 1215 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 PRAMEF18Q5VWM3 479 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 FAM124AQ86V42 546 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 THNSL2Q86YJ6 484 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 ZZZ3Q8IYH5 903 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 KLHL36Q8N4N3 616 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 TXNDC5Q8NBS9 432 aaKnown RBP4.77□□□□□ -1.65
VPS35-203ENST00000562420 CALML6Q8TD86 181 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 LCORQ96JN0 433 aaPredicted RBP4.77□□□□□ -1.65
VPS35-203ENST00000562420 C20orf173Q96LM9 149 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 ZSWIM3Q96MP5 696 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 GBP4Q96PP9 640 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 SPATA25Q9BR10 227 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 XYLT2Q9H1B5 865 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 PCIF1Q9H4Z3 704 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 L2HGDHQ9H9P8 463 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 RTEL1Q9NZ71 1219 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 CROTQ9UKG9 612 aa4.77□□□□□ -1.65
VPS35-203ENST00000562420 A0A1B0GTL3 188 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 MROH6A6NGR9 719 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 H0Y858 1186 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 GOLGA6L22H0YM25 854 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 DVL2O14641 736 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 KCNK3O14649 394 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 KPNA6O60684 536 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 MMEP08473 750 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 BMP7P18075 431 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 STAT3P40763 770 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 NEK4P51957 841 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 KIF11P52732 1056 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 VMACQ2NL98 169 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 RGL3Q3MIN7 710 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 KANK2Q63ZY3 851 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 CNNM4Q6P4Q7 775 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 RNF180Q86T96 592 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 RTN4RL1Q86UN2 441 aaPredicted RBP4.76□□□□□ -1.65
VPS35-203ENST00000562420 STK32CQ86UX6 486 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 KIAA1958Q8N8K9 716 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 SMC1BQ8NDV3 1235 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 OR2W6PQ8NHA6 318 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 FOXRED1Q96CU9 486 aaPredicted RBP4.76□□□□□ -1.65
VPS35-203ENST00000562420 MBD6Q96DN6 1003 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 AJUBAQ96IF1 538 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 C16orf92Q96LL3 132 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 TEPSINQ96N21 525 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 AMNQ9BXJ7 453 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 KATNBL1Q9H079 304 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 TMEM168Q9H0V1 697 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 OR10A5Q9H207 317 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 SLC39A2Q9NP94 309 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 ADAM29Q9UKF5 820 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 CADPSQ9ULU8 1353 aa4.76□□□□□ -1.65
VPS35-203ENST00000562420 DDX3XO00571 662 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS35-203ENST00000562420 MYCLP1P12525 358 aaPredicted RBP4.75□□□□□ -1.65
VPS35-203ENST00000562420 ATP2A2P16615 1042 aaKnown RBP4.75□□□□□ -1.65
VPS35-203ENST00000562420 HOXA5P20719 270 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms