RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 KRT25Q7Z3Z0 450 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 CKAP2LQ8IYA6 745 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 WASF1Q92558 559 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 GAS2L1Q99501 681 aaPredicted RBP17.73■□□□□ 0.43
VPS39-203ENST00000561797 PCDHA10Q9Y5I2 948 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 NLRC5Q86WI3 1866 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 CCDC194A0A1B0GVG4 234 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 CHMP2AO43633 222 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 HBP1O60381 514 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 GAS7O60861 476 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 ATP4AP20648 1035 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 FOSBP53539 338 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 RPAINQ86UA6 219 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 SMAP1Q8IYB5 467 aaPredicted RBP17.72■□□□□ 0.43
VPS39-203ENST00000561797 OXER1Q8TDS5 423 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 ATP8B4Q8TF62 1192 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 SLC5A5Q92911 643 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 TEKT3Q9BXF9 490 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 CERS4Q9HA82 394 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 GABBR1Q9UBS5 961 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 PCDHA2Q9Y5H9 948 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 CDY2AQ9Y6F7 541 aa17.72■□□□□ 0.43
VPS39-203ENST00000561797 ARHGEF15O94989 841 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 GHRP10912 638 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 KLRC1P26715 233 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 MRPS6P82932 125 aaKnown RBP17.71■□□□□ 0.43
VPS39-203ENST00000561797 MGAT3Q09327 533 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 TMEM62Q0P6H9 643 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 LETM2Q2VYF4 491 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 Q4G0T1 1027 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 LRCH2Q5VUJ6 765 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 MTHFD1LQ6UB35 978 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 MYOCDQ8IZQ8 938 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 NSUN7Q8NE18 718 aaKnown RBP17.71■□□□□ 0.43
VPS39-203ENST00000561797 RIT2Q99578 217 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 IFIH1Q9BYX4 1025 aaKnown RBP17.71■□□□□ 0.43
VPS39-203ENST00000561797 DISC1Q9NRI5 854 aa17.71■□□□□ 0.43
VPS39-203ENST00000561797 MAFBQ9Y5Q3 323 aaPredicted RBP17.71■□□□□ 0.43
VPS39-203ENST00000561797 COL4A4P53420 1690 aaPredicted RBP17.71■□□□□ 0.42
VPS39-203ENST00000561797 CYP3A7-CYP3A51PA0A087WV96 503 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 WDR64B1ANS9 1081 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 JAK2O60674 1132 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 AMHP03971 560 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 IGFBP4P22692 258 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 CYP3A7P24462 503 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 TAP1Q03518 808 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 ZNF484Q5JVG2 852 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 PIK3AP1Q6ZUJ8 805 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 UNC45AQ9H3U1 944 aa17.7■□□□□ 0.42
VPS39-203ENST00000561797 DDX25Q9UHL0 483 aaKnown RBP17.7■□□□□ 0.42
VPS39-203ENST00000561797 COL1A2P08123 1366 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 LCHNA4D1U4 455 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 M0QZ92 97 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 RFXAPO00287 272 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 UPP2O95045 317 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 GJB5O95377 273 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 ST3GAL1Q11201 340 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 ADGRE1Q14246 886 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 LPIN1Q14693 890 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 IER5Q5VY09 327 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 MOXD1Q6UVY6 613 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 NEK8Q86SG6 692 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 BBXQ8WY36 941 aaPredicted RBP17.69■□□□□ 0.42
VPS39-203ENST00000561797 PPM1EQ8WY54 764 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 APBB2Q92870 758 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 MBOAT7Q96N66 472 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 LIMCH1Q9UPQ0 1083 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 TRPV2Q9Y5S1 764 aa17.69■□□□□ 0.42
VPS39-203ENST00000561797 SMIM35A0A1B0GVV1 85 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.68■□□□□ 0.42
VPS39-203ENST00000561797 SLC37A4O43826 429 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 PSMD10O75832 226 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 RPLP2P05387 115 aaKnown RBP17.68■□□□□ 0.42
VPS39-203ENST00000561797 SFNP31947 248 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 KRT2P35908 639 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 NR5A1Q13285 461 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 MKRN4PQ13434 485 aaPredicted RBP17.68■□□□□ 0.42
VPS39-203ENST00000561797 EARS2Q5JPH6 523 aaKnown RBP17.68■□□□□ 0.42
VPS39-203ENST00000561797 FBXO47Q5MNV8 452 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 MIER3Q7Z3K6 550 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 SPRED2Q7Z698 418 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 CCDC83Q8IWF9 413 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 ARNTL2Q8WYA1 636 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 RAD9AQ99638 391 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 KIF2CQ99661 725 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 IGSF9BQ9UPX0 1349 aa17.68■□□□□ 0.42
VPS39-203ENST00000561797 COL6A3P12111 3177 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 FAM205CA6NFA0 338 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 ZBTB42B2RXF5 422 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 CCNT1O60563 726 aaKnown RBP17.67■□□□□ 0.42
VPS39-203ENST00000561797 JAK3P52333 1124 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 TRIM29Q14134 588 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 UGCGQ16739 394 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 TSHZ1Q6ZSZ6 1077 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 NME8Q8N427 588 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 ETNPPLQ8TBG4 499 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 CELF4Q9BZC1 486 aaKnown RBP17.67■□□□□ 0.42
VPS39-203ENST00000561797 BRMS1Q9HCU9 246 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 TTC3P53804 2025 aa17.67■□□□□ 0.42
VPS39-203ENST00000561797 EPOPA6NHQ4 379 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms