RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CELF4Q9BZC1 486 aaKnown RBP18.8■□□□□ 0.6
CLN3-208ENST00000561505 RIC8AQ9NPQ8 531 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 SLC12A7Q9Y666 1083 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 TRIOO75962 3097 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 hCG_1642624A0A1W2PR95 340 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 ITGB1P05556 798 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 ITGB3BPQ13352 177 aaPredicted RBP18.79■□□□□ 0.6
CLN3-208ENST00000561505 CEP55Q53EZ4 464 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 CREB3L3Q68CJ9 461 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 WWC2Q6AWC2 1192 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 PPP1R18Q6NYC8 613 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 CRYGNQ8WXF5 182 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 POP1Q99575 1024 aaKnown RBP18.79■□□□□ 0.6
CLN3-208ENST00000561505 ESYT1Q9BSJ8 1104 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 TMX1Q9H3N1 280 aa18.79■□□□□ 0.6
CLN3-208ENST00000561505 ALG13Q9NP73 1137 aaKnown RBP18.79■□□□□ 0.6
CLN3-208ENST00000561505 CNTNAP5Q8WYK1 1306 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 hCG_1984214I3L0E3 225 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 STAG3L1P0CL83 205 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 ARP10275 920 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 GTF2F1P35269 517 aaKnown RBP eCLIP18.78■□□□□ 0.6
CLN3-208ENST00000561505 CLK2P49760 499 aaKnown RBP18.78■□□□□ 0.6
CLN3-208ENST00000561505 STAT5BP51692 787 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 EXOSC10Q01780 885 aaKnown RBP18.78■□□□□ 0.6
CLN3-208ENST00000561505 APOA5Q6Q788 366 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 ABHD15Q6UXT9 468 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 NIPA1Q7RTP0 329 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 EFHBQ8N7U6 833 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 ZNF713Q8N859 430 aaPredicted RBP18.78■□□□□ 0.6
CLN3-208ENST00000561505 AZI2Q9H6S1 392 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 AGO4Q9HCK5 861 aaKnown RBP18.78■□□□□ 0.6
CLN3-208ENST00000561505 CLEC1BQ9P126 229 aa18.78■□□□□ 0.6
CLN3-208ENST00000561505 ZNF318Q5VUA4 2279 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 LINC01565O15544 149 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 SCG2P13521 617 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 SREBF1P36956 1147 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 IGBP1P78318 339 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 COASYQ13057 564 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 TSGA10IPQ3SY00 556 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 MTHFD1LQ6UB35 978 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 FAM49AQ9H0Q0 323 aaPredicted RBP18.77■□□□□ 0.6
CLN3-208ENST00000561505 PKD2L1Q9P0L9 805 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 CD207Q9UJ71 328 aa18.77■□□□□ 0.6
CLN3-208ENST00000561505 C5orf42Q9H799 3197 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 DHX15O43143 795 aaKnown RBP18.76■□□□□ 0.59
CLN3-208ENST00000561505 CCNE2O96020 404 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 CBX2Q14781 532 aaPredicted RBP18.76■□□□□ 0.59
CLN3-208ENST00000561505 HEATR3Q7Z4Q2 680 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 BMP8AQ7Z5Y6 402 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 KIAA0319LQ8IZA0 1049 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 CCDC82Q8N4S0 544 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 KLHL23Q8NBE8 558 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 SMRP1Q8NCR6 262 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 TRAPPC12Q8WVT3 735 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 SDF4Q9BRK5 362 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 ANO3Q9BYT9 981 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 ERVK-5Q9HDB9 667 aa18.76■□□□□ 0.59
CLN3-208ENST00000561505 RBM28Q9NW13 759 aaKnown RBP18.76■□□□□ 0.59
CLN3-208ENST00000561505 KIAA1671Q9BY89 1806 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 ZBTB42B2RXF5 422 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 HBP1O60381 514 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 SARSP49591 514 aaKnown RBP18.75■□□□□ 0.59
CLN3-208ENST00000561505 RCAN1P53805 252 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 FAM189BP81408 668 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 KRT76Q01546 638 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 UBE3AQ05086 875 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 AP3B2Q13367 1082 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 EP400NLQ6ZTU2 488 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 ADGRD2Q7Z7M1 963 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 RNF135Q8IUD6 432 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 ATP8B4Q8TF62 1192 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 PPP2R3CQ969Q6 453 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 LRRC2Q9BYS8 371 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 GLT8D2Q9H1C3 349 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 RGS18Q9NS28 235 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 FAM217BQ9NTX9 383 aaPredicted RBP18.75■□□□□ 0.59
CLN3-208ENST00000561505 BARHL2Q9NY43 387 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 TRPC6Q9Y210 931 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 COL1A2P08123 1366 aa18.75■□□□□ 0.59
CLN3-208ENST00000561505 IGLV3-22A0A075B6J6 115 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 LOC730098B7Z3J9 87 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 C9IYK1 514 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 M0QZ92 97 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 STXBP3O00186 592 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 MGEA5O60502 916 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 GLP2RO95838 553 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 CYP3A4P08684 503 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 KLRC1P26715 233 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 PAK2Q13177 524 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 CSPP1Q1MSJ5 1256 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 HFE2Q6ZVN8 426 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 MICU3Q86XE3 530 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 RAB11FIP4Q86YS3 637 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 POF1BQ8WVV4 589 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 EDAQ92838 391 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 CDHR5Q9HBB8 845 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 BRPF3Q9ULD4 1205 aa18.74■□□□□ 0.59
CLN3-208ENST00000561505 ATP4AP20648 1035 aa18.73■□□□□ 0.59
CLN3-208ENST00000561505 NAPAP54920 295 aa18.73■□□□□ 0.59
CLN3-208ENST00000561505 TMEM62Q0P6H9 643 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms