RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 SRBD1Q8N5C6 995 aaKnown RBP15.94■□□□□ 0.14
LDLR-213ENST00000560502 LZTS2Q9BRK4 669 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 NSUN3Q9H649 340 aaKnown RBP15.94■□□□□ 0.14
LDLR-213ENST00000560502 SLC12A7Q9Y666 1083 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 GSTTP1A0A1W2PQM5 241 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 MBLAC1A4D2B0 266 aaPredicted RBP15.93■□□□□ 0.14
LDLR-213ENST00000560502 GOLGA6L22H0YM25 854 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 H3BQ06 376 aaPredicted RBP15.93■□□□□ 0.14
LDLR-213ENST00000560502 STX6O43752 255 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 GHRP10912 638 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 METAP2P50579 478 aaKnown RBP eCLIP15.93■□□□□ 0.14
LDLR-213ENST00000560502 PPFIA1Q13136 1202 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 LPIN1Q14693 890 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 NSUN7Q8NE18 718 aaKnown RBP15.93■□□□□ 0.14
LDLR-213ENST00000560502 CDHR1Q96JP9 859 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 SEC63Q9UGP8 760 aaKnown RBP15.93■□□□□ 0.14
LDLR-213ENST00000560502 BRPF3Q9ULD4 1205 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 UBIAD1Q9Y5Z9 338 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 ADGRA3Q8IWK6 1321 aa15.93■□□□□ 0.14
LDLR-213ENST00000560502 CPLX1O14810 134 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 RB1P06400 928 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 SYT1P21579 422 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 GNAQP50148 359 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 GRIK4Q16099 956 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 MARCH8Q5T0T0 291 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 FIBCD1Q8N539 461 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 SEPT1Q8WYJ6 367 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 PSTPIP2Q9H939 334 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 ERAP1Q9NZ08 941 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 TUBE1Q9UJT0 475 aa15.92■□□□□ 0.14
LDLR-213ENST00000560502 NAP1L2Q9ULW6 460 aaPredicted RBP15.92■□□□□ 0.14
LDLR-213ENST00000560502 ZSCAN22P10073 491 aaPredicted RBP15.91■□□□□ 0.14
LDLR-213ENST00000560502 CTNNB1P35222 781 aa15.91■□□□□ 0.14
LDLR-213ENST00000560502 BMPR1AP36894 532 aa15.91■□□□□ 0.14
LDLR-213ENST00000560502 LTBRP36941 435 aa15.91■□□□□ 0.14
LDLR-213ENST00000560502 FBXO47Q5MNV8 452 aa15.91■□□□□ 0.14
LDLR-213ENST00000560502 CMTR1Q8N1G2 835 aaKnown RBP15.91■□□□□ 0.14
LDLR-213ENST00000560502 FAM184AQ8NB25 1140 aa15.91■□□□□ 0.14
LDLR-213ENST00000560502 CLP1Q92989 425 aaKnown RBP15.91■□□□□ 0.14
LDLR-213ENST00000560502 ZNF689Q96CS4 500 aaPredicted RBP15.91■□□□□ 0.14
LDLR-213ENST00000560502 LMAN2LQ9H0V9 348 aa15.91■□□□□ 0.14
LDLR-213ENST00000560502 STK36Q9NRP7 1315 aa15.91■□□□□ 0.14
LDLR-213ENST00000560502 GOLGA8AA7E2F4 631 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 PRR33A8MZF0 331 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 ENPP3O14638 875 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 GRM6O15303 877 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 RXRAP19793 462 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 MARK3P27448 753 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 SSTR3P32745 418 aaPredicted RBP15.9■□□□□ 0.14
LDLR-213ENST00000560502 MCM4P33991 863 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 ZP2Q05996 745 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 MTMR1Q13613 665 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 UBE2SQ16763 222 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 CTC1Q2NKJ3 1217 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 LARP1BQ659C4 914 aaKnown RBP15.9■□□□□ 0.14
LDLR-213ENST00000560502 TSHZ1Q6ZSZ6 1077 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 RSPH3Q86UC2 560 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 DNAJB3Q8WWF6 145 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 LINC01599Q8WXQ3 324 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 PCYT2Q99447 389 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 C11orf84Q9BUA3 381 aaPredicted RBP15.9■□□□□ 0.14
LDLR-213ENST00000560502 SMARCAD1Q9H4L7 1026 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 JADE2Q9NQC1 790 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 RBM28Q9NW13 759 aaKnown RBP15.9■□□□□ 0.14
LDLR-213ENST00000560502 PRKAG3Q9UGI9 489 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 ZDHHC9Q9Y397 364 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 RWDD3Q9Y3V2 267 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 CDY2AQ9Y6F7 541 aa15.9■□□□□ 0.14
LDLR-213ENST00000560502 ZNF318Q5VUA4 2279 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 POTEB3A0JP26 581 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 C19orf67A6NJJ6 358 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 CCT2P78371 535 aaKnown RBP15.89■□□□□ 0.13
LDLR-213ENST00000560502 MRPS6P82932 125 aaKnown RBP15.89■□□□□ 0.13
LDLR-213ENST00000560502 PKP1Q13835 747 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 POTEBQ6S5H4 581 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 TMTC3Q6ZXV5 915 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 CRIPAKQ8N1N5 446 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 GLG1Q92896 1179 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 ANP32EQ9BTT0 268 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 AGO3Q9H9G7 860 aaKnown RBP15.89■□□□□ 0.13
LDLR-213ENST00000560502 PKD2L1Q9P0L9 805 aa15.89■□□□□ 0.13
LDLR-213ENST00000560502 hCG_1642624A0A1W2PR95 340 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 SPDYE3A6NKU9 549 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 MAFGO15525 162 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 NCK2O43639 380 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 DGKIO75912 1065 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 BAG4O95429 457 aaKnown RBP15.88■□□□□ 0.13
LDLR-213ENST00000560502 CTDNEP1O95476 244 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 F13A1P00488 732 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 RPLP2P05387 115 aaKnown RBP15.88■□□□□ 0.13
LDLR-213ENST00000560502 ALADP13716 330 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 HYAL1Q12794 435 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 RTN1Q16799 776 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 MICU3Q86XE3 530 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 WASF1Q92558 559 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 ZBTB10Q96DT7 871 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 NCOA5Q9HCD5 579 aaKnown RBP15.88■□□□□ 0.13
LDLR-213ENST00000560502 JPH1Q9HDC5 661 aaPredicted RBP15.88■□□□□ 0.13
LDLR-213ENST00000560502 CLDND1Q9NY35 253 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 PCDHA6Q9UN73 950 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms