RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PPP1R11O60927 126 aaPredicted RBP13.31□□□□□ -0.28
LDLR-212ENST00000560467 EFCAB14O75071 495 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 PRPF40AO75400 957 aaKnown RBP13.31□□□□□ -0.28
LDLR-212ENST00000560467 LGR5O75473 907 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 MYCLP12524 364 aaPredicted RBP13.31□□□□□ -0.28
LDLR-212ENST00000560467 HOXD8P13378 290 aaPredicted RBP13.31□□□□□ -0.28
LDLR-212ENST00000560467 KCNA5P22460 613 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 HSD17B4P51659 736 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 CEBPZQ03701 1054 aaKnown RBP13.31□□□□□ -0.28
LDLR-212ENST00000560467 NR5A1Q13285 461 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 JAKMIP3Q5VZ66 844 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 DHX37Q8IY37 1157 aaKnown RBP13.31□□□□□ -0.28
LDLR-212ENST00000560467 FBXO22Q8NEZ5 403 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 OXER1Q8TDS5 423 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 ANP32EQ9BTT0 268 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 RTEL1Q9NZ71 1219 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 PCDHA6Q9UN73 950 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 PCDHA8Q9Y5H6 950 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 MUC6Q6W4X9 2439 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 YEATS4O95619 227 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 GGPS1O95749 300 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 UBA1P22314 1058 aaKnown RBP13.3□□□□□ -0.28
LDLR-212ENST00000560467 HOXA13P31271 388 aaPredicted RBP13.3□□□□□ -0.28
LDLR-212ENST00000560467 THPOP40225 353 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 ME1P48163 572 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 MKRN4PQ13434 485 aaPredicted RBP13.3□□□□□ -0.28
LDLR-212ENST00000560467 HSDL1Q3SXM5 330 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 LEXMQ3ZCV2 418 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 TTC38Q5R3I4 469 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 CELF3Q5SZQ8 465 aaKnown RBP13.3□□□□□ -0.28
LDLR-212ENST00000560467 MYOCDQ8IZQ8 938 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 DBF4BQ8NFT6 615 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 ZFP91Q96JP5 570 aaPredicted RBP13.3□□□□□ -0.28
LDLR-212ENST00000560467 SPATA33Q96N06 139 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 PDCD2LQ9BRP1 358 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 PTPRSQ13332 1948 aa13.3□□□□□ -0.28
LDLR-212ENST00000560467 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.29□□□□□ -0.28
LDLR-212ENST00000560467 PI4K2BG5E9Z4 385 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 PIK3CDO00329 1044 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 GPR37L1O60883 481 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 IL9P15248 144 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 ZNF76P36508 570 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 SP2Q02086 613 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 ORC2Q13416 577 aaPredicted RBP13.29□□□□□ -0.28
LDLR-212ENST00000560467 NFKBIBQ15653 356 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 TYW1BQ6NUM6 668 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 FAM173BQ6P4H8 233 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 NEK8Q86SG6 692 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 SERINC5Q86VE9 423 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.29□□□□□ -0.28
LDLR-212ENST00000560467 C16orf70Q9BSU1 422 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 OSBPL7Q9BZF2 842 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 INSL6Q9Y581 213 aa13.29□□□□□ -0.28
LDLR-212ENST00000560467 RSPH10B2B2RC85 870 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 LAD1O00515 517 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 SPTLC2O15270 562 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 PPFIA4O75335 1185 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 MBD3O95983 291 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 AMHP03971 560 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 CTSHP09668 335 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 RSPH10BP0C881 870 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 GCFC2P16383 781 aaKnown RBP13.28□□□□□ -0.28
LDLR-212ENST00000560467 USP11P51784 963 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 HTRA4P83105 476 aaPredicted RBP13.28□□□□□ -0.28
LDLR-212ENST00000560467 GHRHRQ02643 423 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 PGM5Q15124 567 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 PTCRAQ6ISU1 281 aaPredicted RBP13.28□□□□□ -0.28
LDLR-212ENST00000560467 FCHSD1Q86WN1 690 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 FAM178BQ8IXR5 827 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 GJD3Q8N144 294 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 SP7Q8TDD2 431 aaPredicted RBP13.28□□□□□ -0.28
LDLR-212ENST00000560467 BCAS3Q9H6U6 928 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 RCOR1Q9UKL0 485 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 ARIH1Q9Y4X5 557 aaPredicted RBP13.28□□□□□ -0.28
LDLR-212ENST00000560467 EMSYQ7Z589 1322 aa13.28□□□□□ -0.28
LDLR-212ENST00000560467 TRIP12Q14669 1992 aaPredicted RBP13.27□□□□□ -0.28
LDLR-212ENST00000560467 C17orf102A2RUQ5 167 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 H3BQ06 376 aaPredicted RBP13.27□□□□□ -0.29
LDLR-212ENST00000560467 CCNT1O60563 726 aaKnown RBP13.27□□□□□ -0.29
LDLR-212ENST00000560467 SMIM10L2AP0DMW4 78 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 SMIM10L2BP0DMW5 78 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 SSTR3P32745 418 aaPredicted RBP13.27□□□□□ -0.29
LDLR-212ENST00000560467 UBE2HP62256 183 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 SLC39A14Q15043 492 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 UBE2SQ16763 222 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 INF2Q27J81 1249 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 LETM2Q2VYF4 491 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 EPC2Q52LR7 807 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 PLEKHG4Q58EX7 1191 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 USP17L6PQ6QN14 398 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 VSIG10LQ86VR7 867 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 TBCKQ8TEA7 893 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 LEO1Q8WVC0 666 aaPredicted RBP13.27□□□□□ -0.29
LDLR-212ENST00000560467 TNFRSF25Q93038 417 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 ATP6V0A1Q93050 837 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 MRPL38Q96DV4 380 aaKnown RBP13.27□□□□□ -0.29
LDLR-212ENST00000560467 USP28Q96RU2 1077 aa13.27□□□□□ -0.29
LDLR-212ENST00000560467 M0R2N6 131 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 TREHO43280 583 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 PPP6R2O75170 966 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms