RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 TAP1Q03518 808 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 PTPN11Q06124 597 aaPredicted RBP6.78□□□□□ -1.32
USP3-215ENST00000559771 SEC23AQ15436 765 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 CDC37Q16543 378 aaPredicted RBP6.78□□□□□ -1.32
USP3-215ENST00000559771 QRICH1Q2TAL8 776 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 GPATCH4Q5T3I0 446 aaKnown RBP6.78□□□□□ -1.32
USP3-215ENST00000559771 LCE4AQ5TA78 99 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 PPP2R2DQ66LE6 453 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 GDF6Q6KF10 455 aaPredicted RBP6.78□□□□□ -1.32
USP3-215ENST00000559771 B4GALNT3Q6L9W6 998 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 TMCO2Q7Z6W1 182 aaPredicted RBP6.78□□□□□ -1.32
USP3-215ENST00000559771 SESTD1Q86VW0 696 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 CHD1LQ86WJ1 897 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 STAG2Q8N3U4 1231 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 PNMA1Q8ND90 353 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 ADAMTS19Q8TE59 1207 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 AFG1LQ8WV93 481 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 ESR2Q92731 530 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 WNT8BQ93098 351 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 RILPL2Q969X0 211 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 MTMR8Q96EF0 704 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 NECAB3Q96P71 396 aaPredicted RBP6.78□□□□□ -1.32
USP3-215ENST00000559771 MTIF3Q9H2K0 278 aaKnown RBP6.78□□□□□ -1.32
USP3-215ENST00000559771 CERS4Q9HA82 394 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 ZSWIM5Q9P217 1185 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 RAPGEFL1Q9UHV5 662 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 DDX41Q9UJV9 622 aaKnown RBP6.78□□□□□ -1.32
USP3-215ENST00000559771 MTCH2Q9Y6C9 303 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 MYO9BQ13459 2157 aa6.78□□□□□ -1.32
USP3-215ENST00000559771 ABCB11O95342 1321 aa6.77□□□□□ -1.32
USP3-215ENST00000559771 LCHNA4D1U4 455 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 ZBBXA8MT70 800 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 HAS3O00219 553 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 ZNF213O14771 459 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 KPNA6O60684 536 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 NBNO60934 754 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 HOXD8P13378 290 aaPredicted RBP6.77□□□□□ -1.33
USP3-215ENST00000559771 AMPD1P23109 780 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 RFC2P35250 354 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 HSD17B4P51659 736 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 KCNQ1P51787 676 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 MRPS5P82675 430 aaKnown RBP6.77□□□□□ -1.33
USP3-215ENST00000559771 RBL2Q08999 1139 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 UBAP2LQ14157 1087 aaKnown RBP6.77□□□□□ -1.33
USP3-215ENST00000559771 MBTPS1Q14703 1052 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 TRIM71Q2Q1W2 868 aaKnown RBP6.77□□□□□ -1.33
USP3-215ENST00000559771 FAM47CQ5HY64 1035 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 CWC27Q6UX04 472 aaKnown RBP6.77□□□□□ -1.33
USP3-215ENST00000559771 SEPT14Q6ZU15 432 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 CYB5R4Q7L1T6 521 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 HERC6Q8IVU3 1022 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 GOLGA6L1Q8N7Z2 621 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 PHOSPHO2Q8TCD6 241 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 TRIM11Q96F44 468 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 ZSCAN10Q96SZ4 725 aaPredicted RBP6.77□□□□□ -1.33
USP3-215ENST00000559771 MAF1Q9H063 256 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 RNF41Q9H4P4 317 aaPredicted RBP6.77□□□□□ -1.33
USP3-215ENST00000559771 BCAS3Q9H6U6 928 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 PNMA2Q9UL42 364 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 TAF6LQ9Y6J9 622 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 PRRC2BQ5JSZ5 2229 aaKnown RBP6.77□□□□□ -1.33
USP3-215ENST00000559771 DOCK5Q9H7D0 1870 aa6.77□□□□□ -1.33
USP3-215ENST00000559771 SIP14410 1827 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 PIK3R2O00459 728 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 PAX4O43316 350 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 GH1P01241 217 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 CXCL10P02778 98 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 GSPT1P15170 499 aaKnown RBP6.76□□□□□ -1.33
USP3-215ENST00000559771 EIF2AK2P19525 551 aaKnown RBP6.76□□□□□ -1.33
USP3-215ENST00000559771 WDR5P61964 334 aaKnown RBP6.76□□□□□ -1.33
USP3-215ENST00000559771 DEFB103AP81534 67 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 ZNF200P98182 395 aaPredicted RBP6.76□□□□□ -1.33
USP3-215ENST00000559771 SP2Q02086 613 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 DHX9Q08211 1270 aaKnown RBP6.76□□□□□ -1.33
USP3-215ENST00000559771 PTGISQ16647 500 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 ASPRV1Q53RT3 343 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 TMEM67Q5HYA8 995 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 SLCO4C1Q6ZQN7 724 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 IL31RAQ8NI17 732 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 EXOC6Q8TAG9 804 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 NSUN6Q8TEA1 469 aaKnown RBP6.76□□□□□ -1.33
USP3-215ENST00000559771 GPKOWQ92917 476 aaPredicted RBP eCLIP6.76□□□□□ -1.33
USP3-215ENST00000559771 IWS1Q96ST2 819 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 SLC9A7Q96T83 725 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 RMDN3Q96TC7 470 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 DSCC1Q9BVC3 393 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 OSBPL7Q9BZF2 842 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 KAT14Q9H8E8 782 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 PXMP2Q9NR77 195 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 HDAC6Q9UBN7 1215 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 GTF2IRD1Q9UHL9 959 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 MAD2L2Q9UI95 211 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 RAD50Q92878 1312 aa6.76□□□□□ -1.33
USP3-215ENST00000559771 PALM3A6NDB9 673 aaPredicted RBP6.75□□□□□ -1.33
USP3-215ENST00000559771 CYTH3O43739 400 aa6.75□□□□□ -1.33
USP3-215ENST00000559771 EIF3JO75822 258 aaKnown RBP6.75□□□□□ -1.33
USP3-215ENST00000559771 BAIAP3O94812 1187 aa6.75□□□□□ -1.33
USP3-215ENST00000559771 F2P00734 622 aa6.75□□□□□ -1.33
USP3-215ENST00000559771 PARP1P09874 1014 aaKnown RBP6.75□□□□□ -1.33
USP3-215ENST00000559771 ZNF286BP0CG31 522 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms