RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 KDM3AQ9Y4C1 1321 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 POTEB3A0JP26 581 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 C19orf67A6NJJ6 358 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 hCG_1984214I3L0E3 225 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 FOSP01100 380 aaPredicted RBP14.96□□□□□ -0.01
TPM1-220ENST00000559556 ALADP13716 330 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 NAPAP54920 295 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 ACTR2P61160 394 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 FUT2Q10981 343 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 HYAL1Q12794 435 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 PLCB4Q15147 1175 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 CEP55Q53EZ4 464 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 POTEBQ6S5H4 581 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 NPAS4Q8IUM7 802 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 CMTR2Q8IYT2 770 aaKnown RBP14.96□□□□□ -0.01
TPM1-220ENST00000559556 ZNF713Q8N859 430 aaPredicted RBP14.96□□□□□ -0.01
TPM1-220ENST00000559556 CYP2W1Q8TAV3 490 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 TNPO1Q92973 898 aaKnown RBP14.96□□□□□ -0.01
TPM1-220ENST00000559556 SDF4Q9BRK5 362 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 TRPC6Q9Y210 931 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 PCDHA2Q9Y5H9 948 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 TRPV2Q9Y5S1 764 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 SPTBN4Q9H254 2564 aa14.96□□□□□ -0.01
TPM1-220ENST00000559556 CFAP54Q96N23 3096 aa14.96□□□□□ -0.02
TPM1-220ENST00000559556 MTCL1Q9Y4B5 1905 aaKnown RBP14.96□□□□□ -0.02
TPM1-220ENST00000559556 SMIM35A0A1B0GVV1 85 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 M0QZ92 97 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 TBX10O75333 385 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 ATG7O95352 703 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 SREBF1P36956 1147 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 SLC26A2P50443 739 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 ITGB3BPQ13352 177 aaPredicted RBP14.95□□□□□ -0.02
TPM1-220ENST00000559556 NAALADL2Q58DX5 795 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 EP400NLQ6ZTU2 488 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 RTN4RL1Q86UN2 441 aaPredicted RBP14.95□□□□□ -0.02
TPM1-220ENST00000559556 ADHFE1Q8IWW8 467 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 TRAPPC12Q8WVT3 735 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 ANO3Q9BYT9 981 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 AGO4Q9HCK5 861 aaKnown RBP14.95□□□□□ -0.02
TPM1-220ENST00000559556 PADI3Q9ULW8 664 aa14.95□□□□□ -0.02
TPM1-220ENST00000559556 MRPL42Q9Y6G3 142 aaKnown RBP14.95□□□□□ -0.02
TPM1-220ENST00000559556 IGKV6D-21A0A0A0MT36 114 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 STXBP3O00186 592 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 MEIS1O00470 390 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 DCXO43602 365 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 ARP10275 920 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 CLK2P49760 499 aaKnown RBP14.94□□□□□ -0.02
TPM1-220ENST00000559556 STAT5BP51692 787 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 ADCY7P51828 1080 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 DLX2Q07687 328 aaPredicted RBP14.94□□□□□ -0.02
TPM1-220ENST00000559556 TMEM62Q0P6H9 643 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 PAK2Q13177 524 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 AP3B2Q13367 1082 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 CAMK1Q14012 370 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 SMAD2Q15796 467 aaKnown RBP14.94□□□□□ -0.02
TPM1-220ENST00000559556 RTN1Q16799 776 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 RNF20Q5VTR2 975 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 SYNE3Q6ZMZ3 975 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 NIPA1Q7RTP0 329 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 PGBD1Q96JS3 809 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 CELF4Q9BZC1 486 aaKnown RBP14.94□□□□□ -0.02
TPM1-220ENST00000559556 PLAGL2Q9UPG8 496 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 COL1A2P08123 1366 aa14.94□□□□□ -0.02
TPM1-220ENST00000559556 ZBTB43O43298 467 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 MBTPS2O43462 519 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 ITGB1P05556 798 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 STAG3L1P0CL83 205 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 SCG2P13521 617 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 EXOSC10Q01780 885 aaKnown RBP14.93□□□□□ -0.02
TPM1-220ENST00000559556 BMP2KLQ5H9B9 411 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 FAM43BQ6ZT52 329 aaPredicted RBP14.93□□□□□ -0.02
TPM1-220ENST00000559556 NME8Q8N427 588 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 GLT8D2Q9H1C3 349 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 ALG13Q9NP73 1137 aaKnown RBP14.93□□□□□ -0.02
TPM1-220ENST00000559556 BARHL2Q9NY43 387 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 BRPF3Q9ULD4 1205 aa14.93□□□□□ -0.02
TPM1-220ENST00000559556 MYO15AQ9UKN7 3530 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 CCNE2O96020 404 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 DNAJB1P25685 340 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 GTF2F1P35269 517 aaKnown RBP eCLIP14.92□□□□□ -0.02
TPM1-220ENST00000559556 IRS1P35568 1242 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 RCAN1P53805 252 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 KRT76Q01546 638 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 SMAD4Q13485 552 aaKnown RBP14.92□□□□□ -0.02
TPM1-220ENST00000559556 TSGA10IPQ3SY00 556 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 MTHFD1LQ6UB35 978 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 ABHD15Q6UXT9 468 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 CCDC60Q8IWA6 550 aaPredicted RBP14.92□□□□□ -0.02
TPM1-220ENST00000559556 CRYGNQ8WXF5 182 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 TCEANC2Q96MN5 208 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 NEK1Q96PY6 1258 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 POP1Q99575 1024 aaKnown RBP14.92□□□□□ -0.02
TPM1-220ENST00000559556 TMX1Q9H3N1 280 aa14.92□□□□□ -0.02
TPM1-220ENST00000559556 NID2Q14112 1375 aa14.91□□□□□ -0.02
TPM1-220ENST00000559556 IGLV3-22A0A075B6J6 115 aa14.91□□□□□ -0.02
TPM1-220ENST00000559556 SMCO2A6NFE2 343 aa14.91□□□□□ -0.02
TPM1-220ENST00000559556 LINC01565O15544 149 aa14.91□□□□□ -0.02
TPM1-220ENST00000559556 HBP1O60381 514 aa14.91□□□□□ -0.02
TPM1-220ENST00000559556 SARSP49591 514 aaKnown RBP14.91□□□□□ -0.02
TPM1-220ENST00000559556 ADAM15Q13444 863 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms