RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 FAM133AQ8N9E0 248 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 RABGGTAQ92696 567 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 SLC5A5Q92911 643 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 CEP63Q96MT8 703 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 MMS19Q96T76 1030 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 LXNQ9BS40 222 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 POLR3CQ9BUI4 534 aaPredicted RBP11.7□□□□□ -0.54
CUX1-217ENST00000558836 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.7□□□□□ -0.54
CUX1-217ENST00000558836 DEFB129Q9H1M3 183 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 SUGCTQ9HAC7 445 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 KCNH7Q9NS40 1196 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 HACL1Q9UJ83 578 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 COL2A1P02458 1487 aaPredicted RBP11.7□□□□□ -0.54
CUX1-217ENST00000558836 MYCLP12524 364 aaPredicted RBP11.69□□□□□ -0.54
CUX1-217ENST00000558836 VAV2P52735 878 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 MRPS25P82663 173 aaKnown RBP11.69□□□□□ -0.54
CUX1-217ENST00000558836 FKBP1CQ5VVH2 108 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 HGSNATQ68CP4 663 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 FAM160B2Q86V87 743 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 CEP112Q8N8E3 955 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 RDH13Q8NBN7 331 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 MTMR14Q8NCE2 650 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 SH2D4AQ9H788 454 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 MYO1AQ9UBC5 1043 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 ARMCX3Q9UH62 379 aaPredicted RBP11.69□□□□□ -0.54
CUX1-217ENST00000558836 ASTN1O14525 1302 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 CTAGE15A4D2H0 777 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 NR3C1P04150 777 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 ICAM1P05362 532 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 CTAGE8P0CG41 777 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 NAP1L1P55209 391 aaKnown RBP11.69□□□□□ -0.54
CUX1-217ENST00000558836 CC2D1AQ6P1N0 951 aaPredicted RBP11.69□□□□□ -0.54
CUX1-217ENST00000558836 GJB7Q6PEY0 223 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 DLK2Q6UY11 383 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 C1orf186Q6ZWK4 172 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 EPM2AIP1Q7L775 607 aaPredicted RBP11.69□□□□□ -0.54
CUX1-217ENST00000558836 CTAGE6Q86UF2 777 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 CTAGE4Q8IX94 777 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 PRPF38AQ8NAV1 312 aaKnown RBP11.69□□□□□ -0.54
CUX1-217ENST00000558836 CLEC4DQ8WXI8 215 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 SECISBP2LQ93073 1101 aaKnown RBP11.69□□□□□ -0.54
CUX1-217ENST00000558836 CNOT7Q9UIV1 285 aaKnown RBP11.69□□□□□ -0.54
CUX1-217ENST00000558836 SAR1BQ9Y6B6 198 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 PSME4Q14997 1843 aa11.69□□□□□ -0.54
CUX1-217ENST00000558836 NCK2O43639 380 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 SORBS3O60504 671 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 ZRANB2O95218 330 aaKnown RBP eCLIP11.68□□□□□ -0.54
CUX1-217ENST00000558836 KIF20AO95235 890 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 HNRNPH3P31942 346 aaKnown RBP11.68□□□□□ -0.54
CUX1-217ENST00000558836 MAGEA1P43355 309 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 PPP2R5CQ13362 524 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 NSMFQ6X4W1 530 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 TRAPPC11Q7Z392 1133 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 TAAR1Q96RJ0 339 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 SMARCAL1Q9NZC9 954 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 ADAMTS1Q9UHI8 967 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 SYNPO2Q9UMS6 1093 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 TGFB1I1O43294 461 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 ZMYND10O75800 440 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 SFMBT2Q5VUG0 894 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 KRT222Q8N1A0 295 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 MXRA8Q9BRK3 442 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 RIPK3Q9Y572 518 aa11.68□□□□□ -0.54
CUX1-217ENST00000558836 TISP43B9A030 160 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 XRCC5P13010 732 aaKnown RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 VCAM1P19320 739 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 CYP2J2P51589 502 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 RPS6P62753 249 aaKnown RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 MRPS9P82933 396 aaKnown RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 PTPROQ16827 1216 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 EDRF1Q3B7T1 1238 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 ODR4Q5SWX8 454 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 UTP14CQ5TAP6 766 aaKnown RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 EHD2Q9NZN4 543 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 TRAF3IP3Q9Y228 551 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 PDE2AO00408 941 aaPredicted RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 TBC1D8O95759 1140 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 GNA14O95837 355 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 PLA2G4AP47712 749 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 CDK17Q00537 523 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 ITGB3BPQ13352 177 aaPredicted RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 BMS1Q14692 1282 aaKnown RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 TEKT3Q9BXF9 490 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 PACSIN1Q9BY11 444 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 RPAP3Q9H6T3 665 aaPredicted RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 PARVGQ9HBI0 331 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 CEP72Q9P209 647 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 PDXKO00764 312 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 CALUO43852 315 aaPredicted RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 ATP9AO75110 1047 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 VSNL1P62760 191 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 TRAF1Q13077 416 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 TNIP1Q15025 636 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 SLC9C1Q4G0N8 1177 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 FAM178BQ8IXR5 827 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 SLC16A10Q8TF71 515 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 TUFT1Q9NNX1 390 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 ARFGAP3Q9NP61 516 aa11.67□□□□□ -0.54
CUX1-217ENST00000558836 ZCCHC17Q9NP64 241 aaKnown RBP11.67□□□□□ -0.54
CUX1-217ENST00000558836 AJAP1Q9UKB5 411 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms