RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 POTEEQ6S8J3 1075 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 STXBP4Q6ZWJ1 553 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 FAM160B2Q86V87 743 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 SIAH1Q8IUQ4 282 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 FMNL3Q8IVF7 1028 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 CHURC1Q8WUH1 139 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 SCFD1Q8WVM8 642 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 LENG9Q96B70 501 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 NOX5Q96PH1 765 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 PNKPQ96T60 521 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 LACRTQ9GZZ8 138 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8□□□□□ -1.13
VPS13C-206ENST00000558338 JADE2Q9NQC1 790 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 TYW1Q9NV66 732 aaKnown RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 RNF14Q9UBS8 474 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 L1RE1Q9UN81 338 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 BZW2Q9Y6E2 419 aaKnown RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 RCCD1A6NED2 376 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 SPDYE5A6NIY4 337 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 ENC1O14682 589 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 IRF6O14896 467 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 EIF3DO15371 548 aaKnown RBP eCLIP7.99□□□□□ -1.135e-6■□□□□ 8.9
VPS13C-206ENST00000558338 PPIP5K2O43314 1243 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 TBC1D12O60347 775 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 EPB41P11171 864 aaKnown RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 NR2F2P24468 414 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 VSNL1P62760 191 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 SETQ01105 290 aaPredicted RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 KCNMA1Q12791 1236 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 ADAM9Q13443 819 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 GIT2Q14161 759 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 TTLL12Q14166 644 aaPredicted RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 ASIC2Q16515 512 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 KNOP1Q1ED39 458 aaKnown RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 HSP90B2PQ58FF3 399 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 FAM83BQ5T0W9 1011 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 EPM2AIP1Q7L775 607 aaPredicted RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 CATSPER3Q86XQ3 398 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 NELFCDQ8IXH7 590 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 NOA1Q8NC60 698 aaKnown RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 CALR3Q96L12 384 aaKnown RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 ZHX3Q9H4I2 956 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 TDRD3Q9H7E2 651 aaKnown RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 ABCB6Q9NP58 842 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 MED4Q9NPJ6 270 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 PLCB1Q9NQ66 1216 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 SEL1LQ9UBV2 794 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 ARMCX3Q9UH62 379 aaPredicted RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 VAV3Q9UKW4 847 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 PRR12Q9ULL5 1215 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 MRPL11Q9Y3B7 192 aaKnown RBP7.99□□□□□ -1.13
VPS13C-206ENST00000558338 DAAM1Q9Y4D1 1078 aa7.99□□□□□ -1.13
VPS13C-206ENST00000558338 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 ANKRD62A6NC57 917 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 GCOM1H8Y6P7 765 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 ZNF263O14978 683 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 EPHB6O15197 1021 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 MSH4O15457 936 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 PPP1R12BO60237 982 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 AFPP02771 609 aaKnown RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 POLR2MP0CAP2 368 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 TCF3P15923 654 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 STAT3P40763 770 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 PAFAH1B1P43034 410 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 CYP27A1Q02318 531 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 CAMK2BQ13554 666 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 NFIL3Q16649 462 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 IFI16Q16666 785 aaKnown RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 ASTE1Q2TB18 679 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 ARSHQ5FYA8 562 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 CCDC181Q5TID7 509 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 FKBP1CQ5VVH2 108 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 MSL1Q68DK7 614 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 MMGT1Q8N4V1 131 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 GLIS3Q8NEA6 775 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 FAM71BQ8TC56 605 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 NEK9Q8TD19 979 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 SMCR8Q8TEV9 937 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 FAM151AQ8WW52 585 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 MMS19Q96T76 1030 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 REEP2Q9BRK0 252 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 WDR11Q9BZH6 1224 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 VPS33BQ9H267 617 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 KCNQ5Q9NR82 932 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 OLFML3Q9NRN5 406 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 PSD3Q9NYI0 1048 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 AIPL1Q9NZN9 384 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 KCND2Q9NZV8 630 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 TBC1D7Q9P0N9 293 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 HDAC6Q9UBN7 1215 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 FBXL5Q9UKA1 691 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 TMX2Q9Y320 296 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 GTPBP10A4D1E9 387 aaKnown RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 BTNL10A8MVZ5 291 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 FAM86B1E9PN63 330 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 FAM13AO94988 1023 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 PLEKP08567 350 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 FAM86B2P0C5J1 330 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 SPATA31C1P0DKV0 1188 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 XRCC5P13010 732 aaKnown RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms