RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 GCLCP48506 637 aaPredicted RBP11.9□□□□□ -0.5
USP3-206ENST00000558157 RCAN1P53805 252 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 NFRKBQ6P4R8 1299 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 MICU3Q86XE3 530 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 IRF2BP1Q8IU81 584 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 MTMR14Q8NCE2 650 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 SMCR8Q8TEV9 937 aaPredicted RBP11.9□□□□□ -0.5
USP3-206ENST00000558157 SYMPKQ92797 1274 aaKnown RBP11.9□□□□□ -0.5
USP3-206ENST00000558157 ZNF570Q96NI8 536 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 MKNK2Q9HBH9 465 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 EXOC1Q9NV70 894 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 LRWD1Q9UFC0 647 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 NFS1Q9Y697 457 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 ENO4A6NNW6 628 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 STXBP3O00186 592 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 CDK8P49336 464 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 PAPOLAP51003 745 aaKnown RBP11.89□□□□□ -0.51
USP3-206ENST00000558157 WTAPQ15007 396 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 NFXL1Q6ZNB6 911 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 IFT81Q8WYA0 676 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 ZBED3Q96IU2 234 aaPredicted RBP11.89□□□□□ -0.51
USP3-206ENST00000558157 ZSCAN10Q96SZ4 725 aaPredicted RBP11.89□□□□□ -0.51
USP3-206ENST00000558157 HINFPQ9BQA5 517 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 ISCUQ9H1K1 167 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 KCNMB3Q9NPA1 279 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 MYOZ2Q9NPC6 264 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 ZNF70Q9UC06 446 aaPredicted RBP11.89□□□□□ -0.51
USP3-206ENST00000558157 PCDHGC5Q9Y5F6 944 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 PCDHA13Q9Y5I0 950 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 TSPY2A6NKD2 308 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 NMT2O60551 498 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 RASA1P20936 1047 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 ZNF280AP59817 542 aaPredicted RBP11.89□□□□□ -0.51
USP3-206ENST00000558157 TNNC1P63316 161 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 SEC23AQ15436 765 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 SPDYE2Q495Y8 402 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 SH3BP5LQ7L8J4 393 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 MICALL2Q8IY33 904 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 CASKIN2Q8WXE0 1202 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 MTA3Q9BTC8 594 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 TMOD2Q9NZR1 351 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 ZFATQ9P243 1243 aa11.89□□□□□ -0.51
USP3-206ENST00000558157 DDTLA6NHG4 134 aaPredicted RBP11.88□□□□□ -0.51
USP3-206ENST00000558157 TCP10L2B9ZVM9 353 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 CES2O00748 559 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 HLA-DOAP06340 250 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 MYBP10242 640 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 ZNF131P52739 623 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 GABPAQ06546 454 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 ODF2Q5BJF6 829 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 CMPK2Q5EBM0 449 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 SPDYCQ5MJ68 293 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 ERMARDQ5T6L9 678 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 ENAHQ8N8S7 591 aaPredicted RBP11.88□□□□□ -0.51
USP3-206ENST00000558157 GBP7Q8N8V2 638 aaPredicted RBP11.88□□□□□ -0.51
USP3-206ENST00000558157 EPSTI1Q96J88 318 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 NOX5Q96PH1 765 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 MYL10Q9BUA6 226 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 TLR10Q9BXR5 811 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 RNF181Q9P0P0 153 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 PLAGL2Q9UPG8 496 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 COL2A1P02458 1487 aaPredicted RBP11.88□□□□□ -0.51
USP3-206ENST00000558157 ENTPD3O75355 529 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 NPM3O75607 178 aaKnown RBP11.88□□□□□ -0.51
USP3-206ENST00000558157 EGFRP00533 1210 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 CLTAP09496 248 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 SLURP2P0DP57 97 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 RXRAP19793 462 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 HSD17B3P37058 310 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 GUCY2FP51841 1108 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 TFAP4Q01664 338 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 ZNF844Q08AG5 666 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 FAM114A1Q8IWE2 563 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 RPUSD2Q8IZ73 545 aaKnown RBP11.88□□□□□ -0.51
USP3-206ENST00000558157 AGAP11Q8TF27 550 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 ERGIC2Q96RQ1 377 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 TSC22D3Q99576 134 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 PLCD4Q9BRC7 762 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 PAPOLBQ9NRJ5 636 aaKnown RBP11.88□□□□□ -0.51
USP3-206ENST00000558157 IRAK4Q9NWZ3 460 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 SLC12A7Q9Y666 1083 aa11.88□□□□□ -0.51
USP3-206ENST00000558157 WNT10BO00744 389 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 ZNF263O14978 683 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 MOCS3O95396 460 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 MYL1P05976 194 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 CYP27A1Q02318 531 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 RBM26Q5T8P6 1007 aaKnown RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 PIGWQ7Z7B1 504 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 ZSCAN29Q8IWY8 852 aaPredicted RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 ZNF444Q8N0Y2 327 aaPredicted RBP11.87□□□□□ -0.51
USP3-206ENST00000558157 ADSSL1Q8N142 457 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 FAM129AQ9BZQ8 928 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 ZNF287Q9HBT7 754 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 POLD4Q9HCU8 107 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 AGPAT5Q9NUQ2 364 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 VPS54Q9P1Q0 977 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 SERPINB13Q9UIV8 391 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 CNTNAP1P78357 1384 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 B4DLN1 442 aa11.87□□□□□ -0.51
USP3-206ENST00000558157 FLOT1O75955 427 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms