RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 FBXO22Q8NEZ5 403 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 PPP1R16BQ96T49 567 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 UHRF1Q96T88 793 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-227ENST00000557307 SDF4Q9BRK5 362 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 INSL6Q9Y581 213 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 MYO7AQ13402 2215 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 MAFGO15525 162 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 CYP3A4P08684 503 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 ZNF76P36508 570 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 EVCP57679 992 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 NPY5RQ15761 445 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 TMEM266Q2M3C6 531 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 MTHFD1LQ6UB35 978 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 RUFY3Q7L099 469 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 PLPPR4Q7Z2D5 763 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 TRMT1LQ7Z2T5 733 aaKnown RBP12.42□□□□□ -0.42
SYNE2-227ENST00000557307 REXO1Q8N1G1 1221 aaKnown RBP12.42□□□□□ -0.42
SYNE2-227ENST00000557307 TMEM40Q8WWA1 233 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 SYMPKQ92797 1274 aaKnown RBP12.42□□□□□ -0.42
SYNE2-227ENST00000557307 KHSRPQ92945 711 aaKnown RBP eCLIP12.42□□□□□ -0.42
SYNE2-227ENST00000557307 YME1L1Q96TA2 773 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 TMX1Q9H3N1 280 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 ZSWIM6Q9HCJ5 1215 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 RAPGEFL1Q9UHV5 662 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 TRPV2Q9Y5S1 764 aa12.42□□□□□ -0.42
SYNE2-227ENST00000557307 POTEB3A0JP26 581 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 IPO5O00410 1097 aaKnown RBP12.41□□□□□ -0.42
SYNE2-227ENST00000557307 ENPP3O14638 875 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 MGEA5O60502 916 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 CSPG5O95196 566 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 IFNAR1P17181 557 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 STK3Q13188 491 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 UGCGQ16739 394 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 POTEBQ6S5H4 581 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 TSHZ1Q6ZSZ6 1077 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 NIPA1Q7RTP0 329 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 APBB2Q92870 758 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 ZNF577Q9BSK1 485 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 RNF26Q9BY78 433 aaPredicted RBP12.41□□□□□ -0.42
SYNE2-227ENST00000557307 AZI2Q9H6S1 392 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 C6orf50Q9HD87 102 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 HCSTQ9UBK5 93 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 PCDHA2Q9Y5H9 948 aa12.41□□□□□ -0.42
SYNE2-227ENST00000557307 ADGRA3Q8IWK6 1321 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 BACH1O14867 736 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 C22orf31O95567 290 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 IBSPP21815 317 aaPredicted RBP12.4□□□□□ -0.42
SYNE2-227ENST00000557307 KLRC1P26715 233 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 PRR16Q569H4 304 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 SWSAP1Q6NVH7 229 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 TMEM192Q8IY95 271 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 CRIPAKQ8N1N5 446 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 ZNF689Q96CS4 500 aaPredicted RBP12.4□□□□□ -0.42
SYNE2-227ENST00000557307 ZNF302Q9NR11 478 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 GJB4Q9NTQ9 266 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 PADI3Q9ULW8 664 aa12.4□□□□□ -0.42
SYNE2-227ENST00000557307 IGSF9BQ9UPX0 1349 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 NCOR1O75376 2440 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 CCDC196A0A1B0GTZ2 297 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 SMIM35A0A1B0GVV1 85 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 TMEM150BA6NC51 233 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 RRN3P2A6NIE6 340 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 H3BNC9 293 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 M0R2N6 131 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 GRM6O15303 877 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 MSH4O15457 936 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 ZNF862O60290 1169 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 REC8O95072 547 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 TDP2O95551 362 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 CIITAP33076 1130 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 GPM6BQ13491 265 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 PAN2Q504Q3 1202 aaKnown RBP12.39□□□□□ -0.43
SYNE2-227ENST00000557307 PDXDC2PQ6P474 469 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 KIAA0319LQ8IZA0 1049 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 ATP8B4Q8TF62 1192 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 HLA-CQ95604 372 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 ZNF668Q96K58 619 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-227ENST00000557307 CELF4Q9BZC1 486 aaKnown RBP12.39□□□□□ -0.43
SYNE2-227ENST00000557307 UBE2ZQ9H832 354 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-227ENST00000557307 CD320Q9NPF0 282 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 LMCD1Q9NZU5 365 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 GABBR1Q9UBS5 961 aa12.39□□□□□ -0.43
SYNE2-227ENST00000557307 NOC2LQ9Y3T9 749 aaKnown RBP12.39□□□□□ -0.43
SYNE2-227ENST00000557307 MRPL42Q9Y6G3 142 aaKnown RBP12.39□□□□□ -0.43
SYNE2-227ENST00000557307 CHMP2AO43633 222 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 DGKIO75912 1065 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 LARGE1O95461 756 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 VTNP04004 478 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 IL9P15248 144 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 DNAJB1P25685 340 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 PSMA5P28066 241 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 CTNNB1P35222 781 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 GTF2F1P35269 517 aaKnown RBP eCLIP12.38□□□□□ -0.43
SYNE2-227ENST00000557307 CLCN3P51790 818 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 TCEAL5Q5H9L2 206 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 RSPH3Q86UC2 560 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 FIBCD1Q8N539 461 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 MRPL38Q96DV4 380 aaKnown RBP12.38□□□□□ -0.43
SYNE2-227ENST00000557307 IL17RAQ96F46 866 aa12.38□□□□□ -0.43
SYNE2-227ENST00000557307 GLT8D2Q9H1C3 349 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms