RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 FERMT3Q86UX7 667 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 BBXQ8WY36 941 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-228ENST00000557302 PRO3102Q9H379 93 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 COLQQ9Y215 455 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-228ENST00000557302 PCDHB6Q9Y5E3 794 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 LTBP2Q14767 1821 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 MBLAC1A4D2B0 266 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-228ENST00000557302 ZNF862O60290 1169 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 OATP04181 439 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 PSMC5P62195 406 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 PRKCEQ02156 737 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 RBL2Q08999 1139 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 EPHA7Q15375 998 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 TRIM71Q2Q1W2 868 aaKnown RBP15.27■□□□□ 0.04
SHMT2-228ENST00000557302 ZNF484Q5JVG2 852 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 MARCH8Q5T0T0 291 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 TAF2Q6P1X5 1199 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 TRMT1LQ7Z2T5 733 aaKnown RBP15.27■□□□□ 0.04
SHMT2-228ENST00000557302 BANK1Q8NDB2 785 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 TRAPPC12Q8WVT3 735 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 WNT8BQ93098 351 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 SCLYQ96I15 445 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 NRBP2Q9NSY0 501 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 CEP131Q9UPN4 1083 aa15.27■□□□□ 0.04
SHMT2-228ENST00000557302 LAMA3Q16787 3333 aa15.27■□□□□ 0.03
SHMT2-228ENST00000557302 COL1A2P08123 1366 aa15.26■□□□□ 0.03
SHMT2-228ENST00000557302 STX6O43752 255 aa15.26■□□□□ 0.03
SHMT2-228ENST00000557302 DKC1O60832 514 aaKnown RBP eCLIP15.26■□□□□ 0.03
SHMT2-228ENST00000557302 P4HBP07237 508 aaKnown RBP15.26■□□□□ 0.03
SHMT2-228ENST00000557302 CKBP12277 381 aa15.26■□□□□ 0.03
SHMT2-228ENST00000557302 CSF2RAP15509 400 aa15.26■□□□□ 0.03
SHMT2-228ENST00000557302 SELPP16109 830 aa15.26■□□□□ 0.03
SHMT2-228ENST00000557302 THPOP40225 353 aa15.26■□□□□ 0.03
SHMT2-228ENST00000557302 QARSP47897 775 aaKnown RBP15.26■□□□□ 0.03
SHMT2-228ENST00000557302 LRRC8DQ7L1W4 858 aa15.26■□□□□ 0.03
SHMT2-228ENST00000557302 C4orf32Q8N8J7 132 aa15.26■□□□□ 0.03
SHMT2-228ENST00000557302 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.26■□□□□ 0.03
SHMT2-228ENST00000557302 TRIOBPQ9H2D6 2365 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 LAD1O00515 517 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 CAND2O75155 1236 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 IQCF3P0C7M6 154 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 RFC2P35250 354 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 EPHB4P54760 987 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 PTGDRQ13258 359 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 BECN1Q14457 450 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 TMEM266Q2M3C6 531 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 XKR3Q5GH77 459 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 ZNF618Q5T7W0 954 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 MTHFD1LQ6UB35 978 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 RUFY4Q6ZNE9 571 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 RSPH3Q86UC2 560 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 RPUSD2Q8IZ73 545 aaKnown RBP15.25■□□□□ 0.03
SHMT2-228ENST00000557302 SPRYD3Q8NCJ5 442 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 NEK9Q8TD19 979 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 LXNQ9BS40 222 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 IL23AQ9NPF7 189 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 SEPT9Q9UHD8 586 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-228ENST00000557302 MTMR6Q9Y217 621 aa15.25■□□□□ 0.03
SHMT2-228ENST00000557302 KAT6AQ92794 2004 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 TRIP12Q14669 1992 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-228ENST00000557302 A0A1W2PPC1 479 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 POTEMA6NI47 508 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 ZBTB42B2RXF5 422 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 PARNO95453 639 aaKnown RBP15.24■□□□□ 0.03
SHMT2-228ENST00000557302 RPLP2P05387 115 aaKnown RBP15.24■□□□□ 0.03
SHMT2-228ENST00000557302 PDIA4P13667 645 aaKnown RBP15.24■□□□□ 0.03
SHMT2-228ENST00000557302 KLRC1P26715 233 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 TECP42680 631 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 RESTQ13127 1097 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 TDHQ8IZJ6 230 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 ZBTB10Q96DT7 871 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 DYDC2Q96IM9 177 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 EIF2AK1Q9BQI3 630 aaKnown RBP15.24■□□□□ 0.03
SHMT2-228ENST00000557302 ZSWIM4Q9H7M6 989 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 RGL1Q9NZL6 768 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 PCDHA2Q9Y5H9 948 aa15.24■□□□□ 0.03
SHMT2-228ENST00000557302 DDX11L8A8MPP1 907 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 RSPH10B2B2RC85 870 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 C22orf31O95567 290 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 PFKMP08237 780 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 CTSHP09668 335 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 RSPH10BP0C881 870 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 ACRP10323 421 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 PRPHP41219 470 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 FXR1P51114 621 aaKnown RBP eCLIP15.23■□□□□ 0.03
SHMT2-228ENST00000557302 FXR2P51116 673 aaKnown RBP eCLIP15.23■□□□□ 0.03
SHMT2-228ENST00000557302 CYP4A11Q02928 519 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 CTTNQ14247 550 aaKnown RBP15.23■□□□□ 0.03
SHMT2-228ENST00000557302 PSRC1Q6PGN9 363 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-228ENST00000557302 TRAF7Q6Q0C0 670 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 DEFB128Q7Z7B8 93 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 RPAINQ86UA6 219 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 TPH2Q8IWU9 490 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 C4orf19Q8IY42 314 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 ERMNQ8TAM6 284 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 DNAJB3Q8WWF6 145 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 NIFKQ9BYG3 293 aaKnown RBP15.23■□□□□ 0.03
SHMT2-228ENST00000557302 RAB34Q9BZG1 259 aa15.23■□□□□ 0.03
SHMT2-228ENST00000557302 FAM49AQ9H0Q0 323 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-228ENST00000557302 MYH9P35579 1960 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms