RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ISCUQ9H1K1 167 aa14.96□□□□□ -0.01
SHMT2-226ENST00000556825 NCOA5Q9HCD5 579 aaKnown RBP14.96□□□□□ -0.01
SHMT2-226ENST00000556825 PTTG2Q9NZH5 202 aa14.96□□□□□ -0.01
SHMT2-226ENST00000556825 USP20Q9Y2K6 914 aa14.96□□□□□ -0.01
SHMT2-226ENST00000556825 H0Y3Z8 333 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 MMP13P45452 471 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 ACADVLP49748 655 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 EMP3P54852 163 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 ADRM1Q16186 407 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 KRT71Q3SY84 523 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 SNX30Q5VWJ9 437 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 WDR59Q6PJI9 974 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 FITM2Q8N6M3 262 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 CASP10Q92851 521 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 TMEM237Q96Q45 408 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 LRMDAQ9H2I8 198 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 TXLNGQ9NUQ3 528 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 DDX43Q9NXZ2 648 aaKnown RBP14.96□□□□□ -0.02
SHMT2-226ENST00000556825 RASAL2Q9UJF2 1139 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 PRELID1Q9Y255 219 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 CAPN6Q9Y6Q1 641 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 MON2Q7Z3U7 1717 aa14.96□□□□□ -0.02
SHMT2-226ENST00000556825 A6NJR5 290 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 KIF28PB7ZC32 967 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 TAF5LO75529 589 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 AFPP02771 609 aaKnown RBP14.95□□□□□ -0.02
SHMT2-226ENST00000556825 UBTFL6P0CB48 400 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-226ENST00000556825 KIF22Q14807 665 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 PTPAQ15257 358 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 SAFBQ15424 915 aaKnown RBP eCLIP14.95□□□□□ -0.02
SHMT2-226ENST00000556825 TRADDQ15628 312 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.95□□□□□ -0.02
SHMT2-226ENST00000556825 EAPPQ56P03 285 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-226ENST00000556825 TTC30AQ86WT1 665 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 RIBC1Q8N443 379 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-226ENST00000556825 SLC43A3Q8NBI5 491 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 CENPOQ9BU64 300 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 STK32BQ9NY57 414 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 PNMA2Q9UL42 364 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 ARL2BPQ9Y2Y0 163 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 PRR36Q9H6K5 1346 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 DIP2AQ14689 1571 aa14.95□□□□□ -0.02
SHMT2-226ENST00000556825 ATP5HO75947 161 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 UBTFL1P0CB47 393 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 POTEIP0CG38 1075 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 ENDOUP21128 410 aaKnown RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 CXCR5P32302 372 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 TXKP42681 527 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 RNASELQ05823 741 aaKnown RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 DCTN2Q13561 401 aaKnown RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 CUL1Q13616 776 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 ITGA9Q13797 1035 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 KRT31Q15323 416 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 LRRC49Q8IUZ0 686 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 DDX50Q9BQ39 737 aaKnown RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 MTFR1LQ9H019 292 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 TIMMDC1Q9NPL8 285 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 EURLQ9NYK6 297 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 SAP30BPQ9UHR5 308 aaKnown RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 TMEM94Q12767 1356 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 CEP170BQ9Y4F5 1589 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 TTC26A0AVF1 554 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 SPTLC1O15269 473 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 TTI1O43156 1089 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 MGEA5O60502 916 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 ZCCHC18P0CG32 403 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 MYBP10242 640 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 HSPA8P11142 646 aaKnown RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 STX17P56962 302 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 MEA1Q16626 185 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 TREML1Q86YW5 311 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 TTC8Q8TAM2 541 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 FNDC8Q8TC99 324 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 UBLCP1Q8WVY7 318 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 ZNF274Q96GC6 653 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 CCT7Q99832 543 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 PRMT1Q99873 361 aaKnown RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 INTS9Q9NV88 658 aaKnown RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 TLR7Q9NYK1 1049 aaKnown RBP14.94□□□□□ -0.02
SHMT2-226ENST00000556825 NDUFA13Q9P0J0 144 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 TSC22D4Q9Y3Q8 395 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 CD2APQ9Y5K6 639 aa14.94□□□□□ -0.02
SHMT2-226ENST00000556825 SMIM31A0A1B0GVY4 71 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 POTEFA5A3E0 1075 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 CDK4P11802 303 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 CPA3P15088 417 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 ECHS1P30084 290 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 IL13P35225 146 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 RGS2P41220 211 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 ARFIP2P53365 341 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 COPB1P53618 953 aaKnown RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 KIF23Q02241 960 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 RASSF7Q02833 373 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 HLTFQ14527 1009 aaKnown RBP eCLIP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 CCDC6Q16204 474 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 DHX32Q7L7V1 743 aaKnown RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 SPATA20Q8TB22 786 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 TBC1D16Q8TBP0 767 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 AGXT2Q9BYV1 514 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 USP44Q9H0E7 712 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms