RNA–Protein interactions for RNA: ENST00000556220.5

ATXN3-236, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-236ENST00000556220 LINC01553A4QN01 128 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 PRKAB2O43741 272 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 GJB5O95377 273 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 GATA4P43694 442 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 ATP8B2P98198 1209 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 PURAQ00577 322 aaKnown RBP8.19□□□□□ -1.1
ATXN3-236ENST00000556220 TCF15Q12870 199 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 BFSP2Q13515 415 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 COL9A3Q14050 684 aaPredicted RBP8.19□□□□□ -1.1
ATXN3-236ENST00000556220 GPNMBQ14956 572 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 TTF1Q15361 905 aaPredicted RBP8.19□□□□□ -1.1
ATXN3-236ENST00000556220 PKN1Q16512 942 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 DUSP28Q4G0W2 176 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 HERC4Q5GLZ8 1057 aaPredicted RBP8.19□□□□□ -1.1
ATXN3-236ENST00000556220 NFRKBQ6P4R8 1299 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 KIAA1211Q6ZU35 1233 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 EEPD1Q7L9B9 569 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 BTLAQ7Z6A9 289 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 FBXO16Q8IX29 292 aaPredicted RBP8.19□□□□□ -1.1
ATXN3-236ENST00000556220 TET1Q8NFU7 2136 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 SSH3Q8TE77 659 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 SCG3Q8WXD2 468 aaKnown RBP8.19□□□□□ -1.1
ATXN3-236ENST00000556220 MRPL38Q96DV4 380 aaKnown RBP8.19□□□□□ -1.1
ATXN3-236ENST00000556220 MTG1Q9BT17 334 aaPredicted RBP8.19□□□□□ -1.1
ATXN3-236ENST00000556220 ACAD9Q9H845 621 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 A1CFQ9NQ94 594 aaKnown RBP8.19□□□□□ -1.1
ATXN3-236ENST00000556220 NYAP2Q9P242 653 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 CTNNA3Q9UI47 895 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 FEM1BQ9UK73 627 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 ZNF532Q9HCE3 1301 aa8.19□□□□□ -1.1
ATXN3-236ENST00000556220 CACNA1BQ00975 2339 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 CYP2D7A0A087X1C5 515 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 BCAR3O75815 825 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 MYL3P08590 195 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 DEFB103AP81534 67 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 PTPN11Q06124 597 aaPredicted RBP8.18□□□□□ -1.1
ATXN3-236ENST00000556220 COL19A1Q14993 1142 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 PTPROQ16827 1216 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 LRRFIP1Q32MZ4 808 aaKnown RBP8.18□□□□□ -1.1
ATXN3-236ENST00000556220 FAM47CQ5HY64 1035 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 RAB44Q7Z6P3 723 aaPredicted RBP8.18□□□□□ -1.1
ATXN3-236ENST00000556220 AMOTL1Q8IY63 956 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 TRMT2AQ8IZ69 625 aaKnown RBP8.18□□□□□ -1.1
ATXN3-236ENST00000556220 EDAQ92838 391 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 PABPC5Q96DU9 382 aaKnown RBP8.18□□□□□ -1.1
ATXN3-236ENST00000556220 ARMT1Q9H993 441 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 VTA1Q9NP79 307 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 HOMER2Q9NSB8 354 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 MUTYHQ9UIF7 546 aa8.18□□□□□ -1.1
ATXN3-236ENST00000556220 DDX49Q9Y6V7 483 aaKnown RBP8.18□□□□□ -1.1
ATXN3-236ENST00000556220 TPRP12270 2363 aaKnown RBP8.17□□□□□ -1.1
ATXN3-236ENST00000556220 ABHD14A-ACY1A0A1B0GW23 586 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 PARNO95453 639 aaKnown RBP8.17□□□□□ -1.1
ATXN3-236ENST00000556220 ALBP02768 609 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 CXCL10P02778 98 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 CPT1AP50416 773 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 RARSP54136 660 aaKnown RBP8.17□□□□□ -1.1
ATXN3-236ENST00000556220 TKFCQ3LXA3 575 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 TIGD5Q53EQ6 642 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 TCEAL5Q5H9L2 206 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 XP32Q5T750 250 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 IER5Q5VY09 327 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 CNKSR3Q6P9H4 555 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 C20orf204Q6ZNR8 217 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 CAGE1Q8TC20 777 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 MORC4Q8TE76 937 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 AFAP1L1Q8TED9 768 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 MKL1Q969V6 931 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 PBXIP1Q96AQ6 731 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 CRBNQ96SW2 442 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 C17orf80Q9BSJ5 609 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 WDR11Q9BZH6 1224 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 CLIP2Q9UDT6 1046 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 INSL6Q9Y581 213 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 DCHS1Q96JQ0 3298 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 MYO5AQ9Y4I1 1855 aaKnown RBP8.17□□□□□ -1.1
ATXN3-236ENST00000556220 MCM3APO60318 1980 aa8.17□□□□□ -1.1
ATXN3-236ENST00000556220 RBM47A0AV96 593 aaKnown RBP8.16□□□□□ -1.1
ATXN3-236ENST00000556220 TMEM221A6NGB7 291 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 M0R296 226 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 NCK2O43639 380 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 KPNA6O60684 536 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 EFCAB14O75071 495 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 COL11A1P12107 1806 aaPredicted RBP8.16□□□□□ -1.1
ATXN3-236ENST00000556220 PTK7Q13308 1070 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 DOC2BQ14184 412 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 SMAD2Q15796 467 aaKnown RBP8.16□□□□□ -1.1
ATXN3-236ENST00000556220 RTN1Q16799 776 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 BRDTQ58F21 947 aaPredicted RBP8.16□□□□□ -1.1
ATXN3-236ENST00000556220 CTR9Q6PD62 1173 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 EP400NLQ6ZTU2 488 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 RPAP2Q8IXW5 612 aaPredicted RBP8.16□□□□□ -1.1
ATXN3-236ENST00000556220 OR6J1Q8NGC5 347 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 PPP1R13LQ8WUF5 828 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 BHMTQ93088 406 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 CALR3Q96L12 384 aaKnown RBP8.16□□□□□ -1.1
ATXN3-236ENST00000556220 NACC1Q96RE7 527 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 POP1Q99575 1024 aaKnown RBP8.16□□□□□ -1.1
ATXN3-236ENST00000556220 HINFPQ9BQA5 517 aa8.16□□□□□ -1.1
ATXN3-236ENST00000556220 IRF2BPLQ9H1B7 796 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms