RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 DIS3L2Q8IYB7 885 aaKnown RBP23.3■■□□□ 1.32
CCDC88C-210ENST00000555995 APBB2Q92870 758 aa23.3■■□□□ 1.32
CCDC88C-210ENST00000555995 FAM20AQ96MK3 541 aa23.3■■□□□ 1.32
CCDC88C-210ENST00000555995 PBX4Q9BYU1 374 aa23.3■■□□□ 1.32
CCDC88C-210ENST00000555995 PCDHA11Q9Y5I1 949 aa23.3■■□□□ 1.32
CCDC88C-210ENST00000555995 CCNT1O60563 726 aaKnown RBP23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 PSMD10O75832 226 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 CTSHP09668 335 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 ST3GAL1Q11201 340 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 MARCH8Q5T0T0 291 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 Q7L0L9 218 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 FAM184AQ8NB25 1140 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 ETNPPLQ8TBG4 499 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 OXER1Q8TDS5 423 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 SEPT8Q92599 483 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 C8orf76Q96K31 380 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 TBC1D32Q96NH3 1257 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 GJB4Q9NTQ9 266 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 PCDHA2Q9Y5H9 948 aa23.29■■□□□ 1.32
CCDC88C-210ENST00000555995 MICAL3Q7RTP6 2002 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 KIF28PB7ZC32 967 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 GPNMBQ14956 572 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 IER5Q5VY09 327 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 FAM43BQ6ZT52 329 aaPredicted RBP23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 MIER3Q7Z3K6 550 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 SLFN12Q8IYM2 578 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 NME8Q8N427 588 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 UIMC1Q96RL1 719 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 GABBR1Q9UBS5 961 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 SZT2Q5T011 3432 aa23.28■■□□□ 1.32
CCDC88C-210ENST00000555995 SMIM35A0A1B0GVV1 85 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 CHMP2AO43633 222 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 MARCH6O60337 910 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 BAG4O95429 457 aaKnown RBP23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 WDR5P61964 334 aaKnown RBP23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 NR5A1Q13285 461 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 MBTPS1Q14703 1052 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 RUFY4Q6ZNE9 571 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 TNFRSF25Q93038 417 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 SEMA6BQ9H3T3 888 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 UNC45AQ9H3U1 944 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 KCNMB3Q9NPA1 279 aa23.27■■□□□ 1.32
CCDC88C-210ENST00000555995 SIP14410 1827 aa23.26■■□□□ 1.31
CCDC88C-210ENST00000555995 DKC1O60832 514 aaKnown RBP eCLIP23.26■■□□□ 1.31
CCDC88C-210ENST00000555995 MRPS6P82932 125 aaKnown RBP23.26■■□□□ 1.31
CCDC88C-210ENST00000555995 PLEKHG4Q58EX7 1191 aa23.26■■□□□ 1.31
CCDC88C-210ENST00000555995 MTHFD1LQ6UB35 978 aa23.26■■□□□ 1.31
CCDC88C-210ENST00000555995 USP38Q8NB14 1042 aa23.26■■□□□ 1.31
CCDC88C-210ENST00000555995 SLC28A3Q9HAS3 691 aa23.26■■□□□ 1.31
CCDC88C-210ENST00000555995 NRBP2Q9NSY0 501 aa23.26■■□□□ 1.31
CCDC88C-210ENST00000555995 SQORQ9Y6N5 450 aa23.26■■□□□ 1.31
CCDC88C-210ENST00000555995 GRXCR1A8MXD5 290 aa23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 SLC37A4O43826 429 aa23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 B3GNT9Q6UX72 402 aa23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 HERC6Q8IVU3 1022 aa23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 DBF4BQ8NFT6 615 aa23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 DNAJB3Q8WWF6 145 aa23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 IFIH1Q9BYX4 1025 aaKnown RBP23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 FAM49AQ9H0Q0 323 aaPredicted RBP23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 ZNF576Q9H609 170 aa23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 STXBP5LQ9Y2K9 1186 aa23.25■■□□□ 1.31
CCDC88C-210ENST00000555995 BTBD18B2RXH4 712 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 MAGEB2O15479 319 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 DTNBO60941 627 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 AMHP03971 560 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 OATP04181 439 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 KLRC1P26715 233 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 FOSBP53539 338 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 PRKCEQ02156 737 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 MGAT3Q09327 533 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 PPP2R5CQ13362 524 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 ZNF710Q8N1W2 664 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 TTYH1Q9H313 450 aaPredicted RBP23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 FOXP1Q9H334 677 aaPredicted RBP23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 TRPV2Q9Y5S1 764 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 CDY2AQ9Y6F7 541 aa23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 LAMA2P24043 3122 aaKnown RBP23.24■■□□□ 1.31
CCDC88C-210ENST00000555995 PTPRSQ13332 1948 aa23.23■■□□□ 1.31
CCDC88C-210ENST00000555995 ATP4AP20648 1035 aa23.23■■□□□ 1.31
CCDC88C-210ENST00000555995 GNL2Q13823 731 aaKnown RBP23.23■■□□□ 1.31
CCDC88C-210ENST00000555995 FBXO18Q8NFZ0 1043 aa23.23■■□□□ 1.31
CCDC88C-210ENST00000555995 TRAPPC12Q8WVT3 735 aa23.23■■□□□ 1.31
CCDC88C-210ENST00000555995 FAM161BQ96MY7 647 aa23.23■■□□□ 1.31
CCDC88C-210ENST00000555995 KDM3AQ9Y4C1 1321 aa23.23■■□□□ 1.31
CCDC88C-210ENST00000555995 EVPLQ92817 2033 aa23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 CHRNA1P02708 482 aa23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 TMOD1P28289 359 aa23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 PBX2P40425 430 aa23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 ORC2Q13416 577 aaPredicted RBP23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 ODR4Q5SWX8 454 aa23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 TSHZ1Q6ZSZ6 1077 aa23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 POTEDQ86YR6 584 aa23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 GUCD1Q96NT3 240 aa23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 ZBED2Q9BTP6 218 aa23.22■■□□□ 1.31
CCDC88C-210ENST00000555995 TLL1O43897 1013 aa23.21■■□□□ 1.31
CCDC88C-210ENST00000555995 NEMFO60524 1076 aa23.21■■□□□ 1.31
CCDC88C-210ENST00000555995 C22orf31O95567 290 aa23.21■■□□□ 1.31
CCDC88C-210ENST00000555995 XKR3Q5GH77 459 aa23.21■■□□□ 1.31
CCDC88C-210ENST00000555995 EARS2Q5JPH6 523 aaKnown RBP23.21■■□□□ 1.31
CCDC88C-210ENST00000555995 FBXO47Q5MNV8 452 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms