RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 SEPT1Q8WYJ6 367 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 RAD54LQ92698 747 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 C16orf70Q9BSU1 422 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 RNPEPQ9H4A4 650 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 BMP2KQ9NSY1 1161 aaPredicted RBP12.03□□□□□ -0.48
TDP1-211ENST00000555178 PCDHA5Q9Y5H7 936 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 BACH1O14867 736 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 ADAMTS4O75173 837 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 MYCNP04198 464 aaPredicted RBP12.03□□□□□ -0.48
TDP1-211ENST00000555178 LAMC2Q13753 1193 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 HIC1Q14526 733 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 TRAPPC12Q8WVT3 735 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 LARP4BQ92615 738 aaKnown RBP12.03□□□□□ -0.48
TDP1-211ENST00000555178 KAT2BQ92831 832 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 EMID1Q96A84 441 aaPredicted RBP12.03□□□□□ -0.48
TDP1-211ENST00000555178 KBTBD4Q9NVX7 518 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 KIAA1468Q9P260 1216 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 LOXHD1Q8IVV2 1947 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 IGSF9BQ9UPX0 1349 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 KDM3AQ9Y4C1 1321 aa12.03□□□□□ -0.48
TDP1-211ENST00000555178 SCN10AQ9Y5Y9 1956 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 A6NJR5 290 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 NOP56O00567 594 aaKnown RBP12.02□□□□□ -0.48
TDP1-211ENST00000555178 LGR5O75473 907 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 LGALS2P05162 132 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 SSBP05455 408 aaKnown RBP eCLIP12.02□□□□□ -0.48
TDP1-211ENST00000555178 P4HBP07237 508 aaKnown RBP12.02□□□□□ -0.48
TDP1-211ENST00000555178 PSAPP07602 524 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 QARSP47897 775 aaKnown RBP12.02□□□□□ -0.48
TDP1-211ENST00000555178 JAK3P52333 1124 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 SOX10P56693 466 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 CACNB1Q02641 598 aaPredicted RBP12.02□□□□□ -0.48
TDP1-211ENST00000555178 TYRO3Q06418 890 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 RAD51AP2Q09MP3 1159 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 DPYDQ12882 1025 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 ARSHQ5FYA8 562 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 LRSAM1Q6UWE0 723 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 PPTC7Q8NI37 304 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 ZNF302Q9NR11 478 aa12.02□□□□□ -0.48
TDP1-211ENST00000555178 MAFBQ9Y5Q3 323 aaPredicted RBP12.02□□□□□ -0.48
TDP1-211ENST00000555178 DUSP11O75319 330 aaKnown RBP12.02□□□□□ -0.49
TDP1-211ENST00000555178 C6orf222P0C671 652 aaPredicted RBP12.02□□□□□ -0.49
TDP1-211ENST00000555178 PRMT2P55345 433 aa12.02□□□□□ -0.49
TDP1-211ENST00000555178 CHMP4BP1P59074 171 aa12.02□□□□□ -0.49
TDP1-211ENST00000555178 PRKCEQ02156 737 aa12.02□□□□□ -0.49
TDP1-211ENST00000555178 SLC9C1Q4G0N8 1177 aa12.02□□□□□ -0.49
TDP1-211ENST00000555178 MIS18BP1Q6P0N0 1132 aa12.02□□□□□ -0.49
TDP1-211ENST00000555178 SMAP1Q8IYB5 467 aaPredicted RBP12.02□□□□□ -0.49
TDP1-211ENST00000555178 TRMT44Q8IYL2 757 aaKnown RBP12.02□□□□□ -0.49
TDP1-211ENST00000555178 GIMAP8Q8ND71 665 aaPredicted RBP12.02□□□□□ -0.49
TDP1-211ENST00000555178 BHMT2Q9H2M3 363 aa12.02□□□□□ -0.49
TDP1-211ENST00000555178 TUFT1Q9NNX1 390 aa12.02□□□□□ -0.49
TDP1-211ENST00000555178 DDX20Q9UHI6 824 aaKnown RBP12.02□□□□□ -0.49
TDP1-211ENST00000555178 TCEAL9Q9UHQ7 104 aa12.02□□□□□ -0.49
TDP1-211ENST00000555178 MYMKA6NI61 221 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 ZBTB42B2RXF5 422 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 PLA2G4BP0C869 781 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 BMP6P22004 513 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 SFNP31947 248 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 STAT5BP51692 787 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 SLC12A3P55017 1021 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 GJA9P57773 515 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 ARHGEF6Q15052 776 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 DYMQ7RTS9 669 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 RUSC1Q9BVN2 902 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.01□□□□□ -0.49
TDP1-211ENST00000555178 NT5C3AQ9H0P0 336 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 XPNPEP3Q9NQH7 507 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 STK17AQ9UEE5 414 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 USP25Q9UHP3 1055 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 MYL3P08590 195 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 HOXD8P13378 290 aaPredicted RBP12.01□□□□□ -0.49
TDP1-211ENST00000555178 CCL5P13501 91 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 PSMC5P62195 406 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 PLCB4Q15147 1175 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 FSCN1Q16658 493 aaKnown RBP12.01□□□□□ -0.49
TDP1-211ENST00000555178 DPCR1Q3MIW9 517 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 CCSAPQ6IQ19 270 aaPredicted RBP12.01□□□□□ -0.49
TDP1-211ENST00000555178 CXCL17Q6UXB2 119 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 C11orf57Q6ZUT1 292 aaPredicted RBP12.01□□□□□ -0.49
TDP1-211ENST00000555178 CEP89Q96ST8 783 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 PYM1Q9BRP8 204 aaKnown RBP12.01□□□□□ -0.49
TDP1-211ENST00000555178 TRIM9Q9C026 710 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 UPF3AQ9H1J1 476 aaKnown RBP12.01□□□□□ -0.49
TDP1-211ENST00000555178 ZSWIM4Q9H7M6 989 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 HMX1Q9NP08 348 aaPredicted RBP12.01□□□□□ -0.49
TDP1-211ENST00000555178 NRBP1Q9UHY1 535 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 TUBE1Q9UJT0 475 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 MAN1B1Q9UKM7 699 aa12.01□□□□□ -0.49
TDP1-211ENST00000555178 RSPH10B2B2RC85 870 aa12□□□□□ -0.49
TDP1-211ENST00000555178 NKRFO15226 690 aaKnown RBP eCLIP12□□□□□ -0.49
TDP1-211ENST00000555178 GTPBP6O43824 516 aaPredicted RBP12□□□□□ -0.49
TDP1-211ENST00000555178 LETM1O95202 739 aaPredicted RBP12□□□□□ -0.49
TDP1-211ENST00000555178 RSPH10BP0C881 870 aa12□□□□□ -0.49
TDP1-211ENST00000555178 RARBP10826 455 aa12□□□□□ -0.49
TDP1-211ENST00000555178 YWHABP31946 246 aaKnown RBP12□□□□□ -0.49
TDP1-211ENST00000555178 GNASQ5JWF2 1037 aa12□□□□□ -0.49
TDP1-211ENST00000555178 KANK3Q6NY19 840 aa12□□□□□ -0.49
TDP1-211ENST00000555178 SV2BQ7L1I2 683 aa12□□□□□ -0.49
TDP1-211ENST00000555178 MAEAQ7L5Y9 396 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms