RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 IQCF3P0C7M6 154 aa16■□□□□ 0.15
SHMT2-217ENST00000555116 CKBP12277 381 aa16■□□□□ 0.15
SHMT2-217ENST00000555116 TRAF7Q6Q0C0 670 aa16■□□□□ 0.15
SHMT2-217ENST00000555116 C16orf59Q7L2K0 433 aa16■□□□□ 0.15
SHMT2-217ENST00000555116 RETREG2Q8NC44 543 aa16■□□□□ 0.15
SHMT2-217ENST00000555116 TRAPPC12Q8WVT3 735 aa16■□□□□ 0.15
SHMT2-217ENST00000555116 SIP14410 1827 aa16■□□□□ 0.15
SHMT2-217ENST00000555116 A0A1W2PPC1 479 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 ZBTB42B2RXF5 422 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 SELPP16109 830 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 PDCP20941 246 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 KCNA4P22459 653 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 IGBP1P78318 339 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 RUFY4Q6ZNE9 571 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 C4orf32Q8N8J7 132 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 BBXQ8WY36 941 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-217ENST00000555116 TNPO1Q92973 898 aaKnown RBP15.99■□□□□ 0.15
SHMT2-217ENST00000555116 IL23AQ9NPF7 189 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 TUBE1Q9UJT0 475 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 RANBP2P49792 3224 aaKnown RBP15.99■□□□□ 0.15
SHMT2-217ENST00000555116 COL1A2P08123 1366 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 STBD1O95210 358 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 SYT1P21579 422 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 TXKP42681 527 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 C9orf50Q5SZB4 431 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 LRRC8DQ7L1W4 858 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 CKAP2LQ8IYA6 745 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 ZBTB10Q96DT7 871 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 TTC12Q9H892 705 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-217ENST00000555116 PCDHA12Q9UN75 941 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 PCDHB6Q9Y5E3 794 aa15.99■□□□□ 0.15
SHMT2-217ENST00000555116 PRKCEQ02156 737 aa15.98■□□□□ 0.15
SHMT2-217ENST00000555116 EPHA7Q15375 998 aa15.98■□□□□ 0.15
SHMT2-217ENST00000555116 SHHQ15465 462 aa15.98■□□□□ 0.15
SHMT2-217ENST00000555116 NFKBIBQ15653 356 aa15.98■□□□□ 0.15
SHMT2-217ENST00000555116 ZNF484Q5JVG2 852 aa15.98■□□□□ 0.15
SHMT2-217ENST00000555116 ZNF618Q5T7W0 954 aa15.98■□□□□ 0.15
SHMT2-217ENST00000555116 NCAPH2Q6IBW4 605 aa15.98■□□□□ 0.15
SHMT2-217ENST00000555116 TDHQ8IZJ6 230 aa15.98■□□□□ 0.15
SHMT2-217ENST00000555116 FAM167AQ96KS9 214 aa15.98■□□□□ 0.15
SHMT2-217ENST00000555116 VPS37CA5D8V6 355 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-217ENST00000555116 OATP04181 439 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 OR52Z1P0C646 297 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 ACRP10323 421 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 RFC2P35250 354 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 THPOP40225 353 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 GPNMBQ14956 572 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 HABP4Q5JVS0 413 aaKnown RBP15.97■□□□□ 0.15
SHMT2-217ENST00000555116 TMEM240Q5SV17 173 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 TAF2Q6P1X5 1199 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 MTHFD1LQ6UB35 978 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 RPAINQ86UA6 219 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 BANK1Q8NDB2 785 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.97■□□□□ 0.157e-8■■□□□ 13.7
SHMT2-217ENST00000555116 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.97■□□□□ 0.15
SHMT2-217ENST00000555116 PCDHA2Q9Y5H9 948 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 ARID2Q68CP9 1835 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 CAND2O75155 1236 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 PSMC5P62195 406 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 MBTPS1Q14703 1052 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 RILPL1Q5EBL4 403 aa15.97■□□□□ 0.15
SHMT2-217ENST00000555116 TRMT1LQ7Z2T5 733 aaKnown RBP15.97■□□□□ 0.15
SHMT2-217ENST00000555116 MYH15Q9Y2K3 1946 aa15.96■□□□□ 0.15
SHMT2-217ENST00000555116 P4HBP07237 508 aaKnown RBP15.96■□□□□ 0.15
SHMT2-217ENST00000555116 KLRC1P26715 233 aa15.96■□□□□ 0.15
SHMT2-217ENST00000555116 QARSP47897 775 aaKnown RBP15.96■□□□□ 0.15
SHMT2-217ENST00000555116 FAM26DQ5JW98 314 aa15.96■□□□□ 0.15
SHMT2-217ENST00000555116 ZNF365Q70YC5 407 aa15.96■□□□□ 0.15
SHMT2-217ENST00000555116 BRAPQ7Z569 592 aa15.96■□□□□ 0.15
SHMT2-217ENST00000555116 RPUSD2Q8IZ73 545 aaKnown RBP15.96■□□□□ 0.15
SHMT2-217ENST00000555116 NRBP2Q9NSY0 501 aa15.96■□□□□ 0.15
SHMT2-217ENST00000555116 RGL1Q9NZL6 768 aa15.96■□□□□ 0.15
SHMT2-217ENST00000555116 WRAP73Q9P2S5 460 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-217ENST00000555116 MTMR6Q9Y217 621 aa15.96■□□□□ 0.15
SHMT2-217ENST00000555116 NBNO60934 754 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 C22orf31O95567 290 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 PTGDRQ13258 359 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 TARBP2Q15633 366 aaKnown RBP15.95■□□□□ 0.14
SHMT2-217ENST00000555116 XKR3Q5GH77 459 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 DEFB128Q7Z7B8 93 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 FERMT3Q86UX7 667 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 DNAJB3Q8WWF6 145 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 DYDC2Q96IM9 177 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 EIF2AK1Q9BQI3 630 aaKnown RBP15.95■□□□□ 0.14
SHMT2-217ENST00000555116 NIFKQ9BYG3 293 aaKnown RBP15.95■□□□□ 0.14
SHMT2-217ENST00000555116 SMIM35A0A1B0GVV1 85 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 TMEM150BA6NC51 233 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 POTEMA6NI47 508 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 RSPH10B2B2RC85 870 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 RBAK-RBAKDNI3L0D1 243 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 PARNO95453 639 aaKnown RBP15.95■□□□□ 0.14
SHMT2-217ENST00000555116 CXCL10P02778 98 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 PFKMP08237 780 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 RSPH10BP0C881 870 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 RESTQ13127 1097 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 PSRC1Q6PGN9 363 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-217ENST00000555116 CEP89Q96ST8 783 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 HSD17B14Q9BPX1 270 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 LXNQ9BS40 222 aa15.95■□□□□ 0.14
SHMT2-217ENST00000555116 CEP131Q9UPN4 1083 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms