RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NME8Q8N427 588 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 USP38Q8NB14 1042 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 KDM3AQ9Y4C1 1321 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 DDX39AO00148 427 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 BACH1O14867 736 aa18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 PSMD10O75832 226 aa18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 PSAPP07602 524 aa18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 MYOGP15173 224 aa18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 GCFC2P16383 781 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 POU3F3P20264 500 aaPredicted RBP18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 SFNP31947 248 aa18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 MRPS6P82932 125 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 ZNF484Q5JVG2 852 aa18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 PDXDC2PQ6P474 469 aa18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 B3GNT9Q6UX72 402 aa18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 BBXQ8WY36 941 aaPredicted RBP18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 GAS2L1Q99501 681 aaPredicted RBP18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 RAD9AQ99638 391 aa18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 IFIH1Q9BYX4 1025 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 ORC3Q9UBD5 711 aaPredicted RBP18.16■□□□□ 0.5
CCDC88C-209ENST00000554872 ZBTB42B2RXF5 422 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 TLL1O43897 1013 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 GAS7O60861 476 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 LARGE1O95461 756 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 AMHP03971 560 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 FDPSP14324 419 aaKnown RBP18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 ATP4AP20648 1035 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 JAK3P52333 1124 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 HTRA4P83105 476 aaPredicted RBP18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 TAP1Q03518 808 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 IER5Q5VY09 327 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 PPP4R3AQ6IN85 833 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 SWSAP1Q6NVH7 229 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 MTHFD1LQ6UB35 978 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 NSUN7Q8NE18 718 aaKnown RBP18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 IL27Q8NEV9 243 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 ETNPPLQ8TBG4 499 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 DNAJB3Q8WWF6 145 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 FAM167AQ96KS9 214 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 NAP1L4Q99733 375 aaKnown RBP18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 PRDM12Q9H4Q4 367 aa18.15■□□□□ 0.5
CCDC88C-209ENST00000554872 LPIN1Q14693 890 aa18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 FBXO47Q5MNV8 452 aa18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 LRCH2Q5VUJ6 765 aa18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 TSHZ1Q6ZSZ6 1077 aa18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 SLC17A8Q8NDX2 589 aa18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 SP7Q8TDD2 431 aaPredicted RBP18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 OSBPL7Q9BZF2 842 aa18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 DISC1Q9NRI5 854 aa18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 KCNJ14Q9UNX9 436 aa18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 CEP131Q9UPN4 1083 aa18.14■□□□□ 0.49
CCDC88C-209ENST00000554872 CCDC194A0A1B0GVG4 234 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 TDP2O95551 362 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 IGBP1P78318 339 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 ADGRE1Q14246 886 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 NEK8Q86SG6 692 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 ZNF710Q8N1W2 664 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 TOP1MTQ969P6 601 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 KIF2CQ99661 725 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 TEKT3Q9BXF9 490 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 KCNMB3Q9NPA1 279 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 LIMCH1Q9UPQ0 1083 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 INSL6Q9Y581 213 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 TRPV2Q9Y5S1 764 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 CDY2AQ9Y6F7 541 aa18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 MYH9P35579 1960 aaKnown RBP18.13■□□□□ 0.49
CCDC88C-209ENST00000554872 WDR81Q562E7 1941 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 TBX3O15119 743 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 ARHGEF15O94989 841 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 C22orf31O95567 290 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 KLRC1P26715 233 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 RBM25P49756 843 aaKnown RBP18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 INF2Q27J81 1249 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 NECAB1Q8N987 351 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 TRAPPC12Q8WVT3 735 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 TNFRSF25Q93038 417 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 FAM20AQ96MK3 541 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 ZBED2Q9BTP6 218 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 UNC45AQ9H3U1 944 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 GABBR1Q9UBS5 961 aa18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 DDX25Q9UHL0 483 aaKnown RBP18.12■□□□□ 0.49
CCDC88C-209ENST00000554872 M0QZ92 97 aa18.11■□□□□ 0.49
CCDC88C-209ENST00000554872 GHRP10912 638 aa18.11■□□□□ 0.49
CCDC88C-209ENST00000554872 ST3GAL1Q11201 340 aa18.11■□□□□ 0.49
CCDC88C-209ENST00000554872 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.11■□□□□ 0.49
CCDC88C-209ENST00000554872 KIAA0319LQ8IZA0 1049 aa18.11■□□□□ 0.49
CCDC88C-209ENST00000554872 LLPHQ9BRT6 129 aaKnown RBP18.11■□□□□ 0.49
CCDC88C-209ENST00000554872 FTHL17Q9BXU8 183 aa18.11■□□□□ 0.49
CCDC88C-209ENST00000554872 CELF4Q9BZC1 486 aaKnown RBP18.11■□□□□ 0.49
CCDC88C-209ENST00000554872 BRMS1Q9HCU9 246 aa18.11■□□□□ 0.49
CCDC88C-209ENST00000554872 LCHNA4D1U4 455 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 MAGEB2O15479 319 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 ZNF862O60290 1169 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 MMP1P03956 469 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 OATP04181 439 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 KRT2P35908 639 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 ERVK-21P61565 698 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 PPP2R5CQ13362 524 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms