RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SHC4Q6S5L8 630 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 TRMT1LQ7Z2T5 733 aaKnown RBP13.71□□□□□ -0.21
SHMT2-209ENST00000553949 C4orf19Q8IY42 314 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 ATP8B4Q8TF62 1192 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 PAWRQ96IZ0 340 aaKnown RBP13.71□□□□□ -0.21
SHMT2-209ENST00000553949 FAM167AQ96KS9 214 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 CCSER1Q9C0I3 900 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 SENP6Q9GZR1 1112 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-209ENST00000553949 C11orf49Q9H6J7 331 aa13.71□□□□□ -0.21
SHMT2-209ENST00000553949 LYPLA2O95372 231 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 SMIM10L2AP0DMW4 78 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 SMIM10L2BP0DMW5 78 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 MUTP22033 750 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 YWHABP31946 246 aaKnown RBP13.7□□□□□ -0.22
SHMT2-209ENST00000553949 TXLNAP40222 546 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 ITGA7Q13683 1181 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 XKR3Q5GH77 459 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 NFRKBQ6P4R8 1299 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 POTEGQ6S5H5 508 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 NECAB2Q7Z6G3 386 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 UBE2Q1Q7Z7E8 422 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 C7orf31Q8N865 590 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 TMEM87AQ8NBN3 555 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 PPP1R13LQ8WUF5 828 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 BBXQ8WY36 941 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-209ENST00000553949 CDK5RAP3Q96JB5 506 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 GBP4Q96PP9 640 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 PNMA5Q96PV4 448 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 NRBP2Q9NSY0 501 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 KIAA1024Q9UPX6 916 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 TRPC6Q9Y210 931 aa13.7□□□□□ -0.22
SHMT2-209ENST00000553949 KDM3AQ9Y4C1 1321 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 A0A087WWV3 80 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 A0A0U1RQG5 324 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-209ENST00000553949 A0A1W2PQ27 194 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 A0A1W2PQ64 194 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 A0A1W2PQD8 194 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 DDX11L8A8MPP1 907 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 HBP1O60381 514 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 CMA1P23946 247 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 PPFIA1Q13136 1202 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 GRB10Q13322 594 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 KARSQ15046 597 aaKnown RBP13.69□□□□□ -0.22
SHMT2-209ENST00000553949 TMEM119Q4V9L6 283 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 FAM47CQ5HY64 1035 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 HYIQ5T013 277 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 RESP18Q5W5W9 173 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 ANO5Q75V66 913 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 SESTD1Q86VW0 696 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 SLC43A3Q8NBI5 491 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 RASSF8Q8NHQ8 419 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 CALML4Q96GE6 196 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 NACC1Q96RE7 527 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 PLIN2Q99541 437 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 NIFKQ9BYG3 293 aaKnown RBP13.69□□□□□ -0.22
SHMT2-209ENST00000553949 DDX19AQ9NUU7 478 aaKnown RBP13.69□□□□□ -0.22
SHMT2-209ENST00000553949 HDAC6Q9UBN7 1215 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 CCDC39Q9UFE4 941 aa13.69□□□□□ -0.22
SHMT2-209ENST00000553949 SEPT9Q9UHD8 586 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-209ENST00000553949 KIAA0100Q14667 2235 aaKnown RBP13.68□□□□□ -0.22
SHMT2-209ENST00000553949 TMEM150BA6NC51 233 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 ARVCFO00192 962 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 ZBTB39O15060 712 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 XRCC6P12956 609 aaKnown RBP eCLIP13.68□□□□□ -0.22
SHMT2-209ENST00000553949 INSRRP14616 1297 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 ATN1P54259 1190 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-209ENST00000553949 PTPN11Q06124 597 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-209ENST00000553949 GRIK4Q16099 956 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 TPRNQ4KMQ1 711 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 PLA2G4FQ68DD2 849 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 SLC39A5Q6ZMH5 540 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 OTUD6AQ7L8S5 288 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 KCTD17Q8N5Z5 321 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 PIGOQ8TEQ8 1089 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 SEZ6LQ9BYH1 1024 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 NT5C3AQ9H0P0 336 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 ANKEF1Q9NU02 776 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 FAM13BQ9NYF5 915 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 GTF2IRD1Q9UHL9 959 aa13.68□□□□□ -0.22
SHMT2-209ENST00000553949 NRCAMQ92823 1304 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 A0A087X0B3 334 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 C17orf102A2RUQ5 167 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 GOLGA6L4A6NEF3 574 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 ZBTB42B2RXF5 422 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 PLCG1P19174 1290 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 HOXC8P31273 242 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 CDK7P50613 346 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 IGBP1P78318 339 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 HIC1Q14526 733 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 SNX17Q15036 470 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 ZNF484Q5JVG2 852 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 C1orf53Q5VUE5 145 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 KCNK18Q7Z418 384 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 LMBR1Q8WVP7 490 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 PANK2Q9BZ23 570 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 CYP26B1Q9NR63 512 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 SETD4Q9NVD3 440 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 DBR1Q9UK59 544 aaKnown RBP13.67□□□□□ -0.22
SHMT2-209ENST00000553949 DNM3Q9UQ16 869 aa13.67□□□□□ -0.22
SHMT2-209ENST00000553949 COL1A2P08123 1366 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms