RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 KDRP35968 1356 aa3.33□□□□□ -1.88
PTCH1-223ENST00000551623 NCAPD2Q15021 1401 aa3.33□□□□□ -1.88
PTCH1-223ENST00000551623 CD163L1Q9NR16 1453 aa3.33□□□□□ -1.88
PTCH1-223ENST00000551623 SBF1O95248 1867 aa3.33□□□□□ -1.88
PTCH1-223ENST00000551623 CCDC85CA6NKD9 419 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 DDX3XO00571 662 aaKnown RBP eCLIP3.32□□□□□ -1.88
PTCH1-223ENST00000551623 ZNF623O75123 536 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 PRPF40AO75400 957 aaKnown RBP3.32□□□□□ -1.88
PTCH1-223ENST00000551623 ZNF202O95125 648 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 C8BP07358 591 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 L1CAMP32004 1257 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 EPHB4P54760 987 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 KCNA1Q09470 495 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 DALRD3Q5D0E6 543 aaKnown RBP3.32□□□□□ -1.88
PTCH1-223ENST00000551623 PRR31Q5SQ13 230 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 NETO2Q8NC67 525 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 ZCRB1Q8TBF4 217 aaKnown RBP3.32□□□□□ -1.88
PTCH1-223ENST00000551623 USP33Q8TEY7 942 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 PEX11GQ96HA9 241 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 MPHOSPH9Q99550 1183 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 SYT3Q9BQG1 590 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 DSCC1Q9BVC3 393 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 NOC4LQ9BVI4 516 aaKnown RBP3.32□□□□□ -1.88
PTCH1-223ENST00000551623 TRIM8Q9BZR9 551 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 PCDH18Q9HCL0 1135 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 PARP2Q9UGN5 583 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 ZFR2Q9UPR6 939 aaKnown RBP3.32□□□□□ -1.88
PTCH1-223ENST00000551623 SBNO2Q9Y2G9 1366 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 TIAM2Q8IVF5 1701 aa3.32□□□□□ -1.88
PTCH1-223ENST00000551623 N4BP2Q86UW6 1770 aaPredicted RBP3.32□□□□□ -1.88
PTCH1-223ENST00000551623 MON2Q7Z3U7 1717 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 NRXN2Q9P2S2 1712 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 RTL1A6NKG5 1358 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 A0A087X1B8 175 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 ANKRD33BA6NCL7 494 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 PF4P02776 101 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 GYS1P13807 737 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 GARTP22102 1010 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 MCM7P33993 719 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 MAP2K2P36507 400 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 CCNFP41002 786 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 PPP2CBP62714 309 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 PPP2CAP67775 309 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 TMF1P82094 1093 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 PDE4CQ08493 712 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 MPP2Q14168 576 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 KRTAP15-1Q3LI76 137 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 HABP4Q5JVS0 413 aaKnown RBP3.31□□□□□ -1.88
PTCH1-223ENST00000551623 CWF19L1Q69YN2 538 aaKnown RBP3.31□□□□□ -1.88
PTCH1-223ENST00000551623 REC114Q7Z4M0 266 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 FBXO33Q7Z6M2 555 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 SCUBE1Q8IWY4 988 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 TTLL6Q8N841 843 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 FBXO27Q8NI29 283 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 IP6K1Q92551 441 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 VOPP1Q96AW1 172 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 ZNF503Q96F45 646 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 CRAMP1Q96RY5 1269 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 SRRTQ9BXP5 876 aaKnown RBP3.31□□□□□ -1.88
PTCH1-223ENST00000551623 JADE2Q9NQC1 790 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 GMIPQ9P107 970 aa3.31□□□□□ -1.88
PTCH1-223ENST00000551623 DLEC1Q9Y238 1755 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 PCDH11XQ9BZA7 1347 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 PCDH11YQ9BZA8 1340 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 CENPJQ9HC77 1338 aaPredicted RBP3.3□□□□□ -1.88
PTCH1-223ENST00000551623 IQCA1LA6NCM1 817 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 NARSO43776 548 aaKnown RBP3.3□□□□□ -1.88
PTCH1-223ENST00000551623 TBC1D8O95759 1140 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 FXR1P51114 621 aaKnown RBP eCLIP3.3□□□□□ -1.88
PTCH1-223ENST00000551623 INHBCP55103 352 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 DAB2P98082 770 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 ITPK1Q13572 414 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 AUHQ13825 339 aaKnown RBP3.3□□□□□ -1.88
PTCH1-223ENST00000551623 CSRP2Q16527 193 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 DEFB115Q30KQ5 88 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 SLFN13Q68D06 897 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 OVOS1Q6IE37 1185 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 RNF207Q6ZRF8 634 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 ARHGEF18Q6ZSZ5 1173 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 RGS22Q8NE09 1264 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 Q8TCH9 128 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 ZG16BQ96DA0 208 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 RHOVQ96L33 236 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 PTCHD1Q96NR3 888 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 PTPN18Q99952 460 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 CNNM2Q9H8M5 875 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 LTN1O94822 1766 aa3.3□□□□□ -1.88
PTCH1-223ENST00000551623 EDC4Q6P2E9 1401 aaKnown RBP3.29□□□□□ -1.88
PTCH1-223ENST00000551623 KIF24Q5T7B8 1368 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 SCN4AP35499 1836 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 ZBTB7CA1YPR0 619 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 H0Y8X5 98 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 CYP27B1O15528 508 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 ITGAEP38570 1179 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 ECE1P42892 770 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 DDR1Q08345 913 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 DPY19L2P1Q6NXN4 242 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 SMIM5Q71RC9 77 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 STK32CQ86UX6 486 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 TMEM192Q8IY95 271 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms