RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-222	ENST00000551425	ENAH	Q8N8S7	591 aa	Predicted RBP	13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	COLGALT1	Q8NBJ5	622 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	EVI5L	Q96CN4	794 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	ADAM7	Q9H2U9	754 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	NGRN	Q9NPE2	291 aa	Known RBP	13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	ERAP1	Q9NZ08	941 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	IGSF9B	Q9UPX0	1349 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	EP300	Q09472	2414 aa	Predicted RBP	13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425		A0A0D9SFI3	127 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	LMNA	P02545	664 aa	Known RBP	13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	TCF7	P36402	384 aa	Predicted RBP	13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	PLCB3	Q01970	1234 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	SP4	Q02446	784 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	PAK2	Q13177	524 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	PLPP4	Q5VZY2	271 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	LLGL2	Q6P1M3	1020 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	TICAM2	Q86XR7	235 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	STAG2	Q8N3U4	1231 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	MRPS27	Q92552	414 aa	Known RBP	13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	CASP10	Q92851	521 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	FAM227B	Q96M60	508 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	TMX1	Q9H3N1	280 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	RNF216	Q9NWF9	866 aa	Predicted RBP	13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	CDH22	Q9UJ99	828 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	PCDHB7	Q9Y5E2	793 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	TRPV2	Q9Y5S1	764 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	FRYL	O94915	3013 aa		13.79	□□□□□ -0.2
PTCH1-222	ENST00000551425	HIDE1	A8MVS5	230 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	KLRF2	D3W0D1	207 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425		M0QZ92	97 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	PI15	O43692	258 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	ASGR2	P07307	311 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	MTHFR	P42898	656 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	APOBR	Q0VD83	1088 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	PLCD3	Q8N3E9	789 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	DTWD2	Q8NBA8	298 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	FLCN	Q8NFG4	579 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	CNTNAP3B	Q96NU0	1288 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	TCF25	Q9BQ70	676 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	RTP3	Q9BQQ7	232 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	CNTNAP3	Q9BZ76	1288 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	FAM49A	Q9H0Q0	323 aa	Predicted RBP	13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	TYW1	Q9NV66	732 aa	Known RBP	13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	DLL3	Q9NYJ7	618 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	RTEL1	Q9NZ71	1219 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	PUF60	Q9UHX1	559 aa	Known RBP	13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	SALL3	Q9BXA9	1300 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	KDM3A	Q9Y4C1	1321 aa		13.78	□□□□□ -0.2
PTCH1-222	ENST00000551425	RRN3P2	A6NIE6	340 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	TBKBP1	A7MCY6	615 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	MYH6	P13533	1939 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	NPR3	P17342	541 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	LAG3	P18627	525 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	MARK3	P27448	753 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	XRRA1	Q6P2D8	792 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	KIAA2013	Q8IYS2	634 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	TDRD5	Q8NAT2	981 aa	Known RBP	13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	KCNG4	Q8TDN1	519 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	SEPT1	Q8WYJ6	367 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	CELF4	Q9BZC1	486 aa	Known RBP	13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	CWH43	Q9H720	699 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	ENTPD7	Q9NQZ7	604 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	LIMD1	Q9UGP4	676 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	UST	Q9Y2C2	406 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	DNAH14	Q0VDD8	3507 aa		13.77	□□□□□ -0.21
PTCH1-222	ENST00000551425	GSTTP1	A0A1W2PQM5	241 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	ZNF213	O14771	459 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	FAM102B	Q5T8I3	360 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	PCNX4	Q63HM2	1172 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	DIEXF	Q68CQ4	756 aa	Known RBP	13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	GLG1	Q92896	1179 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	ZBTB10	Q96DT7	871 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	SMARCAD1	Q9H4L7	1026 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	RGS18	Q9NS28	235 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	C1orf112	Q9NSG2	853 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	ZSWIM5	Q9P217	1185 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	HCST	Q9UBK5	93 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	MAD2L2	Q9UI95	211 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	HCFC2	Q9Y5Z7	792 aa		13.76	□□□□□ -0.21
PTCH1-222	ENST00000551425	PALM3	A6NDB9	673 aa	Predicted RBP	13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425		B4E1Z4	1266 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425		C9IYK1	514 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	MGEA5	O60502	916 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	INSRR	P14616	1297 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	IGBP1	P78318	339 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	TMEM62	Q0P6H9	643 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	SLC35G1	Q2M3R5	365 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	C20orf194	Q5TEA3	1177 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	KIAA1841	Q6NSI8	718 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	SLC24A5	Q71RS6	500 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	NLRX1	Q86UT6	975 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	NME8	Q8N427	588 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	RIOX1	Q9H6W3	641 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	ERVK-5	Q9HDB9	667 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	PCDHA2	Q9Y5H9	948 aa		13.75	□□□□□ -0.21
PTCH1-222	ENST00000551425	ATP9A	O75110	1047 aa		13.74	□□□□□ -0.21

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