RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 USP11P51784 963 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 PPP1R18Q6NYC8 613 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 MSANTD4Q8NCY6 345 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 NXF1Q9UBU9 619 aaKnown RBP16.31■□□□□ 0.2
CUX1-214ENST00000550008 N4BP1O75113 896 aaKnown RBP16.3■□□□□ 0.2
CUX1-214ENST00000550008 NSFP46459 744 aaKnown RBP16.3■□□□□ 0.2
CUX1-214ENST00000550008 CCDC121Q6ZUS5 278 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 ZBTB8OSQ8IWT0 167 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 REEP2Q9BRK0 252 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 SMARCAL1Q9NZC9 954 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 PCDHB4Q9Y5E5 795 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 SRGNP10124 158 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 LMNB1P20700 586 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 PDIA5Q14554 519 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 KCTD2Q14681 263 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 ZC2HC1CQ53FD0 456 aaPredicted RBP16.3■□□□□ 0.2
CUX1-214ENST00000550008 FBXL16Q8N461 479 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 IPO4Q8TEX9 1081 aaKnown RBP16.3■□□□□ 0.2
CUX1-214ENST00000550008 APOL6Q9BWW8 343 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 LRRC4BQ9NT99 713 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 BUB1BO60566 1050 aaPredicted RBP16.3■□□□□ 0.2
CUX1-214ENST00000550008 EZH2Q15910 746 aaKnown RBP16.3■□□□□ 0.2
CUX1-214ENST00000550008 ZFPM1Q8IX07 1006 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 NKX2-3Q8TAU0 364 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 CAPN11Q9UMQ6 739 aa16.3■□□□□ 0.2
CUX1-214ENST00000550008 EZRP15311 586 aaKnown RBP16.29■□□□□ 0.2
CUX1-214ENST00000550008 PTK2Q05397 1052 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 MTMR2Q13614 643 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 CYFIP1Q7L576 1253 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 ZNF70Q9UC06 446 aaPredicted RBP16.29■□□□□ 0.2
CUX1-214ENST00000550008 E7EVH7 732 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 MYO1FO00160 1098 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 WNT7AO00755 349 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 PLTPP55058 493 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 CC2D1AQ6P1N0 951 aaPredicted RBP16.29■□□□□ 0.2
CUX1-214ENST00000550008 ANKRD42Q8N9B4 389 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 NYAP2Q9P242 653 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 HERC5Q9UII4 1024 aaKnown RBP16.29■□□□□ 0.2
CUX1-214ENST00000550008 NFU1Q9UMS0 254 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 RNF40O75150 1001 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 PLEKP08567 350 aaPredicted RBP16.29■□□□□ 0.2
CUX1-214ENST00000550008 ADCY1Q08828 1119 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 SUPT20HL1Q3ZLR7 823 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 SAMD7Q7Z3H4 446 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 SLC51AQ86UW1 340 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 CDAN1Q8IWY9 1227 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 RNF169Q8NCN4 708 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 C7orf25Q9BPX7 421 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 CEP72Q9P209 647 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 PCDHAC2Q9Y5I4 1007 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 PDS5AQ29RF7 1337 aaKnown RBP16.29■□□□□ 0.2
CUX1-214ENST00000550008 GOLGA8SH3BPF8 625 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 TADA3O75528 432 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 MYBP10242 640 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 MFAP3P55082 362 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 Q3C1V9 767 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 DPY19L2Q6NUT2 758 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 SCYL2Q6P3W7 929 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 SCARA5Q6ZMJ2 495 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 GLYCTKQ8IVS8 523 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 PROM2Q8N271 834 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 CCDC63Q8NA47 563 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 AGBL1Q96MI9 1066 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 NLRP4Q96MN2 994 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 TMEM206Q9H813 350 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 NRBP2Q9NSY0 501 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 DNAJC17Q9NVM6 304 aaKnown RBP16.29■□□□□ 0.2
CUX1-214ENST00000550008 MRFAP1Q9Y605 127 aa16.29■□□□□ 0.2
CUX1-214ENST00000550008 LMBRD2Q68DH5 695 aaPredicted RBP16.28■□□□□ 0.2
CUX1-214ENST00000550008 SWSAP1Q6NVH7 229 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 RUFY4Q6ZNE9 571 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 SESTD1Q86VW0 696 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 RAB17Q9H0T7 212 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 GABBR1Q9UBS5 961 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 ATP8A1Q9Y2Q0 1164 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 CCND2P30279 289 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 PROCA1Q8NCQ7 364 aaPredicted RBP16.28■□□□□ 0.2
CUX1-214ENST00000550008 BCAS4Q8TDM0 211 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 PGRMC1O00264 195 aaKnown RBP16.28■□□□□ 0.2
CUX1-214ENST00000550008 GAS8O95995 478 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 ADCY8P40145 1251 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 PMS1P54277 932 aaKnown RBP16.28■□□□□ 0.2
CUX1-214ENST00000550008 ZNF211Q13398 564 aaPredicted RBP16.28■□□□□ 0.2
CUX1-214ENST00000550008 TRIP13Q15645 432 aaPredicted RBP16.28■□□□□ 0.2
CUX1-214ENST00000550008 DENND2CQ68D51 928 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 PPP1R21Q6ZMI0 780 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 GOLPH3Q9H4A6 298 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 FEM1BQ9UK73 627 aa16.28■□□□□ 0.2
CUX1-214ENST00000550008 ANKRD65E5RJM6 399 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 K7ERI5 159 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 GRB10Q13322 594 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 NAALADL2Q58DX5 795 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 THNSL1Q8IYQ7 743 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 CEP63Q96MT8 703 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 PSMD1Q99460 953 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 TYW1Q9NV66 732 aaKnown RBP16.27■□□□□ 0.2
CUX1-214ENST00000550008 A0A1W2PQC6 194 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 TBC1D8O95759 1140 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 DPEP1P16444 411 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms