RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 Q3C1V9 767 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 LRP10Q7Z4F1 713 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 ZBTB33Q86T24 672 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 CEP72Q9P209 647 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 ESYT3A0FGR9 886 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 EVX2Q03828 476 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 KCTD2Q14681 263 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 LDHDQ86WU2 507 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 FBF1Q8TES7 1133 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 RASSF4Q9H2L5 321 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 SLC37A4O43826 429 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 KRT15P19012 456 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 LXNQ9BS40 222 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 USP11P51784 963 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 TFAMQ00059 246 aaKnown RBP17.67■□□□□ 0.42
CUX1-213ENST00000549414 ZNF746Q6NUN9 644 aaPredicted RBP17.67■□□□□ 0.42
CUX1-213ENST00000549414 SCYL2Q6P3W7 929 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 VPS37BQ9H9H4 285 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 KCNG1Q9UIX4 513 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 ABT1Q9ULW3 272 aaKnown RBP17.67■□□□□ 0.42
CUX1-213ENST00000549414 CAPN11Q9UMQ6 739 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 NFU1Q9UMS0 254 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 ATP8A1Q9Y2Q0 1164 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 SUGT1Q9Y2Z0 365 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 SALL1Q9NSC2 1324 aa17.67■□□□□ 0.42
CUX1-213ENST00000549414 ATP2A2P16615 1042 aaKnown RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 PDIA5Q14554 519 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 CAPS2Q9BXY5 557 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 RNF181Q9P0P0 153 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 MRFAP1Q9Y605 127 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 CD58P19256 250 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 INPP5BP32019 993 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 LACTBP83111 547 aaPredicted RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 NCAPHQ15003 741 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 CEP63Q96MT8 703 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 PALM3A6NDB9 673 aaPredicted RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 BUB1BO60566 1050 aaPredicted RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 VEGFAP15692 232 aaPredicted RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 SNRNP48Q6IEG0 339 aaKnown RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 B4GALNT4Q76KP1 1039 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 GIMAP8Q8ND71 665 aaPredicted RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 ZNF668Q96K58 619 aaPredicted RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 RNF146Q9NTX7 359 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 NXF1Q9UBU9 619 aaKnown RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 SERPINA10Q9UK55 444 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 C3P01024 1663 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 A0A1W2PQC6 194 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 TADA3O75528 432 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 SRGAP2CP0DJJ0 459 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 CCND2P30279 289 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 EPHB4P54760 987 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 TTC31Q49AM3 519 aaPredicted RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 PROCA1Q8NCQ7 364 aaPredicted RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 RTFDC1Q9BY42 306 aaPredicted RBP17.66■□□□□ 0.42
CUX1-213ENST00000549414 TXNDC16Q9P2K2 825 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 CAMTA1Q9Y6Y1 1673 aa17.66■□□□□ 0.42
CUX1-213ENST00000549414 YARSP54577 528 aaKnown RBP17.65■□□□□ 0.42
CUX1-213ENST00000549414 SPC25Q9HBM1 224 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 PRR12Q9ULL5 1215 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 MAPK4P31152 587 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 MXRA7P84157 204 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 IL17RBQ9NRM6 502 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 DAAM1Q9Y4D1 1078 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 PDS5AQ29RF7 1337 aaKnown RBP17.65■□□□□ 0.42
CUX1-213ENST00000549414 H0YCG3 227 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 GOLGA8SH3BPF8 625 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 ZNF185O15231 689 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 TNNC2P02585 160 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 CEP55Q53EZ4 464 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 PRAMEF18Q5VWM3 479 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 PRPF38AQ8NAV1 312 aaKnown RBP17.65■□□□□ 0.42
CUX1-213ENST00000549414 C7orf25Q9BPX7 421 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 TYW1Q9NV66 732 aaKnown RBP17.65■□□□□ 0.42
CUX1-213ENST00000549414 ZNF148Q9UQR1 794 aa17.65■□□□□ 0.42
CUX1-213ENST00000549414 THAP12O43422 761 aa17.64■□□□□ 0.42
CUX1-213ENST00000549414 ADCY1Q08828 1119 aa17.64■□□□□ 0.42
CUX1-213ENST00000549414 ORC2Q13416 577 aaPredicted RBP17.64■□□□□ 0.42
CUX1-213ENST00000549414 PPP2R5DQ14738 602 aa17.64■□□□□ 0.42
CUX1-213ENST00000549414 BSPRYQ5W0U4 402 aa17.64■□□□□ 0.42
CUX1-213ENST00000549414 HHIPL2Q6UWX4 724 aa17.64■□□□□ 0.42
CUX1-213ENST00000549414 SAAL1Q96ER3 474 aa17.64■□□□□ 0.42
CUX1-213ENST00000549414 APOL6Q9BWW8 343 aa17.64■□□□□ 0.42
CUX1-213ENST00000549414 ACTN1P12814 892 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 GRIK5Q16478 980 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 NAALADL2Q58DX5 795 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 CCDC89Q8N998 374 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 ATP8B1O43520 1251 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 CCT5P48643 541 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 RASA3Q14644 834 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 PNMA2Q9UL42 364 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 SESTD1Q86VW0 696 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 RAB20Q9NX57 234 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 HERC5Q9UII4 1024 aaKnown RBP17.64■□□□□ 0.41
CUX1-213ENST00000549414 FEM1BQ9UK73 627 aa17.64■□□□□ 0.41
CUX1-213ENST00000549414 K7ERI5 159 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 FGGP02679 453 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 SRGNP10124 158 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 TRIP13Q15645 432 aaPredicted RBP17.63■□□□□ 0.41
CUX1-213ENST00000549414 ZNF394Q53GI3 561 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 MIS18BP1Q6P0N0 1132 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms