RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 ERVK-21P61565 698 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 ST3GAL1Q11201 340 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 SEC23AQ15436 765 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 PTPROQ16827 1216 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 TCEAL5Q5H9L2 206 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 TAPT1Q6NXT6 567 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 NSMFQ6X4W1 530 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 CCDC155Q8N6L0 562 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 FANCBQ8NB91 859 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 NEK9Q8TD19 979 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 PURBQ96QR8 312 aaKnown RBP8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 RAD9AQ99638 391 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 LZTS2Q9BRK4 669 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 ZKSCAN3Q9BRR0 538 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 SCAND2PQ9GZW5 306 aaPredicted RBP8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 NCOA5Q9HCD5 579 aaKnown RBP8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 BRMS1Q9HCU9 246 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 VTA1Q9NP79 307 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 CLDND1Q9NY35 253 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 CLIP2Q9UDT6 1046 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 GVINP1Q7Z2Y8 2422 aa8.11□□□□□ -1.11
DEPDC4-208ENST00000549341 RIF1Q5UIP0 2472 aaKnown RBP8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 GOLGA6L4A6NEF3 574 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 OAZ1P54368 228 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 FOXK2Q01167 660 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 TCF15Q12870 199 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 PKP1Q13835 747 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 PTGISQ16647 500 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 DUSP28Q4G0W2 176 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 BRDTQ58F21 947 aaPredicted RBP8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 IQSEC1Q6DN90 963 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 LRRC8DQ7L1W4 858 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 BRAPQ7Z569 592 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 MYOCDQ8IZQ8 938 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 ENAHQ8N8S7 591 aaPredicted RBP8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 BANK1Q8NDB2 785 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 NEDD1Q8NHV4 660 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 PBXIP1Q96AQ6 731 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 MRPL38Q96DV4 380 aaKnown RBP8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 POP1Q99575 1024 aaKnown RBP8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 ALG1Q9BT22 464 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 SLC26A6Q9BXS9 759 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 RNF26Q9BY78 433 aaPredicted RBP8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 WDR11Q9BZH6 1224 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 INCENPQ9NQS7 918 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 FEM1BQ9UK73 627 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 ZDHHC9Q9Y397 364 aa8.1□□□□□ -1.11
DEPDC4-208ENST00000549341 WDR87Q6ZQQ6 2873 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 TMEM221A6NGB7 291 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 TMEM232C9JQI7 657 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 M0R296 226 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 PRPF40AO75400 957 aaKnown RBP8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 CTDNEP1O95476 244 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 TOP1P11387 765 aaKnown RBP8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 SELPP16109 830 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 RASA1P20936 1047 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 ADD1P35611 737 aaKnown RBP8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 GMPRP36959 345 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 STAT2P52630 851 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 COL9A3Q14050 684 aaPredicted RBP8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 TCTN1Q2MV58 587 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 KLHL40Q2TBA0 621 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 MUM1L1Q5H9M0 696 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 NFRKBQ6P4R8 1299 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 CNKSR3Q6P9H4 555 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 RNF19BQ6ZMZ0 732 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 RPAINQ86UA6 219 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 RNF135Q8IUD6 432 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 FAM177A1Q8N128 213 aaPredicted RBP8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 AFAP1L1Q8TED9 768 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 ATOH1Q92858 354 aaPredicted RBP8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 PABPC5Q96DU9 382 aaKnown RBP8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 TRERF1Q96PN7 1200 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 PRKAG3Q9UGI9 489 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 STX8Q9UNK0 236 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 Q9Y3F1 56 aa8.09□□□□□ -1.11
DEPDC4-208ENST00000549341 DMDP11532 3685 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 PRPF3O43395 683 aaKnown RBP8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 NBNO60934 754 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 BMP3P12645 472 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 RXRAP19793 462 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 WNT7BP56706 349 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 UBE2HP62256 183 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 EPC2Q52LR7 807 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 HERC4Q5GLZ8 1057 aaPredicted RBP8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 SLFN13Q68D06 897 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 RASGRP2Q7LDG7 609 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 RAB11FIP4Q86YS3 637 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 TMEM87AQ8NBN3 555 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 PNMA1Q8ND90 353 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 FBXO18Q8NFZ0 1043 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 CAGE1Q8TC20 777 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 DHX38Q92620 1227 aaKnown RBP8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 COPS5Q92905 334 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 CEP95Q96GE4 821 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 YME1L1Q96TA2 773 aa8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 NSUN3Q9H649 340 aaKnown RBP8.08□□□□□ -1.12
DEPDC4-208ENST00000549341 CYP39A1Q9NYL5 469 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms