RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 BTLAQ7Z6A9 289 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 CYP4X1Q8N118 509 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 FAM133AQ8N9E0 248 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 KIFC2Q96AC6 838 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 API5Q9BZZ5 524 aaKnown RBP7.77□□□□□ -1.17
LIMA1-204ENST00000549064 SRA1Q9HD15 236 aaKnown RBP7.77□□□□□ -1.17
LIMA1-204ENST00000549064 ALG13Q9NP73 1137 aaKnown RBP7.77□□□□□ -1.17
LIMA1-204ENST00000549064 NPHS2Q9NP85 383 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 TMEM63CQ9P1W3 806 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 FNDC3AQ9Y2H6 1198 aaKnown RBP7.77□□□□□ -1.17
LIMA1-204ENST00000549064 KCNMB2Q9Y691 235 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 PTPRZ1P23471 2315 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-204ENST00000549064 MICAL3Q7RTP6 2002 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 SPATA31C2B4DYI2 1134 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 ZBED4O75132 1171 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 RGS20O76081 388 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 GJB5O95377 273 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 NDUFB10O96000 172 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 PDE6AP16499 860 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 PURAQ00577 322 aaKnown RBP7.76□□□□□ -1.17
LIMA1-204ENST00000549064 ARID5AQ03989 594 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 CLUL1Q15846 466 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 HERC4Q5GLZ8 1057 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-204ENST00000549064 TCEAL5Q5H9L2 206 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 NXPE4Q6UWF7 544 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 XKR5Q6UX68 686 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 KIAA1211Q6ZU35 1233 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 PRICKLE2Q7Z3G6 844 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 FAM9BQ8IZU0 186 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 PRPF38AQ8NAV1 312 aaKnown RBP7.76□□□□□ -1.17
LIMA1-204ENST00000549064 CHST13Q8NET6 341 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 EAF2Q96CJ1 260 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-204ENST00000549064 CCDC17Q96LX7 622 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 ARMT1Q9H993 441 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 KANSL2Q9H9L4 492 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 SLC38A10Q9HBR0 1119 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 A1CFQ9NQ94 594 aaKnown RBP7.76□□□□□ -1.17
LIMA1-204ENST00000549064 PRKAG3Q9UGI9 489 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 TNNQ9UQP3 1299 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 CTDP1Q9Y5B0 961 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-204ENST00000549064 CACNA1HO95180 2353 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 ZNF532Q9HCE3 1301 aa7.76□□□□□ -1.17
LIMA1-204ENST00000549064 TMEM221A6NGB7 291 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 ASB14A6NK59 587 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 F5H6K3 240 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 M0R296 226 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 GIPC1O14908 333 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 SPINT1O43278 529 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 GNAI2P04899 355 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 GRNP28799 593 aaKnown RBP7.75□□□□□ -1.17
LIMA1-204ENST00000549064 LTBRP36941 435 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 VCPP55072 806 aaKnown RBP7.75□□□□□ -1.17
LIMA1-204ENST00000549064 CHMP4BP1P59074 171 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 KLRC3Q07444 240 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 ARSJQ5FYB0 599 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-204ENST00000549064 SLC9C2Q5TAH2 1124 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 C12orf60Q5U649 245 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 IQSEC1Q6DN90 963 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 PDE12Q6L8Q7 609 aaKnown RBP7.75□□□□□ -1.17
LIMA1-204ENST00000549064 C16orf86Q6ZW13 317 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 BMP8AQ7Z5Y6 402 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 EDAQ92838 391 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 HPS1Q92902 700 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 PABPC5Q96DU9 382 aaKnown RBP7.75□□□□□ -1.17
LIMA1-204ENST00000549064 MRPL38Q96DV4 380 aaKnown RBP7.75□□□□□ -1.17
LIMA1-204ENST00000549064 CRBNQ96SW2 442 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 RAD9AQ99638 391 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 UPF3BQ9BZI7 483 aaKnown RBP7.75□□□□□ -1.17
LIMA1-204ENST00000549064 NEUROD4Q9HD90 331 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 CLDND1Q9NY35 253 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 FAM8A1Q9UBU6 413 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 FBXO40Q9UH90 709 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 Q9Y3F1 56 aa7.75□□□□□ -1.17
LIMA1-204ENST00000549064 TCRBV5S4A2TA0A5A2 114 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 EREGO14944 169 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 NBNO60934 754 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 GADD45BO75293 160 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-204ENST00000549064 SURF6O75683 361 aaKnown RBP7.74□□□□□ -1.17
LIMA1-204ENST00000549064 BCAR3O75815 825 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 DLX2Q07687 328 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-204ENST00000549064 SLFN5Q08AF3 891 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 BFSP2Q13515 415 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 SMAD2Q15796 467 aaKnown RBP7.74□□□□□ -1.17
LIMA1-204ENST00000549064 DUSP28Q4G0W2 176 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 TIGD5Q53EQ6 642 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 CNKSR3Q6P9H4 555 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 TRIM67Q6ZTA4 783 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 ASCL5Q7RTU5 278 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 RPAINQ86UA6 219 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 SUGP1Q8IWZ8 645 aaKnown RBP7.74□□□□□ -1.17
LIMA1-204ENST00000549064 STK11IPQ8N1F8 1099 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 LINC00528Q8N1L1 170 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 ATOH1Q92858 354 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-204ENST00000549064 CHMP4CQ96CF2 233 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 CTAGE1Q96RT6 745 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 MTG1Q9BT17 334 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-204ENST00000549064 BCO2Q9BYV7 579 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 ACAD9Q9H845 621 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 RNF146Q9NTX7 359 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 FAM50BQ9Y247 325 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms