RNA–Protein interactions for RNA: ENST00000548421.2

BRF1-213, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 1 (best) BASIC

Gene BRF1, Length 1,452 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-213	ENST00000548421	GRK4	P32298	578 aa		32.11	■■■□□ 2.73
BRF1-213	ENST00000548421	PNOC	Q13519	176 aa		32.11	■■■□□ 2.73
BRF1-213	ENST00000548421	DHX8	Q14562	1220 aa	Known RBP	32.11	■■■□□ 2.73
BRF1-213	ENST00000548421	ZNF862	O60290	1169 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	DUSP11	O75319	330 aa	Known RBP	32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	MYL1	P05976	194 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	YWHAB	P31946	246 aa	Known RBP	32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	STAT5B	P51692	787 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	CKAP2L	Q8IYA6	745 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	SYT2	Q8N9I0	419 aa	Predicted RBP	32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	ANP32E	Q9BTT0	268 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	LRRC27	Q9C0I9	530 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	BHMT2	Q9H2M3	363 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	PTPN22	Q9Y2R2	807 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	ARID2	Q68CP9	1835 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	GTPBP6	O43824	516 aa	Predicted RBP	32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	SSB	P05455	408 aa	Known RBP eCLIP	32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	MMP3	P08254	477 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	PRR29	P0C7W0	189 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	XRCC6	P12956	609 aa	Known RBP eCLIP	32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	SLC12A3	P55017	1021 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	PRKCE	Q02156	737 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	UTP14C	Q5TAP6	766 aa	Known RBP	32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	AP5M1	Q9H0R1	490 aa		32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	DBR1	Q9UK59	544 aa	Known RBP	32.1	■■■□□ 2.73
BRF1-213	ENST00000548421	ZBTB39	O15060	712 aa		32.09	■■■□□ 2.73
BRF1-213	ENST00000548421	PPFIA4	O75335	1185 aa		32.09	■■■□□ 2.73
BRF1-213	ENST00000548421	INHA	P05111	366 aa		32.09	■■■□□ 2.73
BRF1-213	ENST00000548421	HOXD8	P13378	290 aa	Predicted RBP	32.09	■■■□□ 2.73
BRF1-213	ENST00000548421	CCND3	P30281	292 aa	Predicted RBP	32.09	■■■□□ 2.73
BRF1-213	ENST00000548421	PLPPR4	Q7Z2D5	763 aa		32.09	■■■□□ 2.73
BRF1-213	ENST00000548421	GLG1	Q92896	1179 aa		32.09	■■■□□ 2.73
BRF1-213	ENST00000548421		A6NJR5	290 aa		32.08	■■■□□ 2.73
BRF1-213	ENST00000548421	ERCC4	Q92889	916 aa	Predicted RBP	32.08	■■■□□ 2.73
BRF1-213	ENST00000548421	SMARCAD1	Q9H4L7	1026 aa		32.08	■■■□□ 2.73
BRF1-213	ENST00000548421	ANKEF1	Q9NU02	776 aa		32.08	■■■□□ 2.73
BRF1-213	ENST00000548421	KIAA1468	Q9P260	1216 aa		32.08	■■■□□ 2.73
BRF1-213	ENST00000548421	SYCE3	A1L190	88 aa		32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	HSPA1A	P0DMV8	641 aa	Known RBP	32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	HSPA1B	P0DMV9	641 aa	Known RBP	32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	RARB	P10826	455 aa		32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	CPT1A	P50416	773 aa		32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	DPYD	Q12882	1025 aa		32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	DGKD	Q16760	1214 aa		32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	XKR3	Q5GH77	459 aa		32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	OTUD6A	Q7L8S5	288 aa		32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	C7orf25	Q9BPX7	421 aa		32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	BLZF1	Q9H2G9	400 aa		32.07	■■■□□ 2.72
BRF1-213	ENST00000548421	STBD1	O95210	358 aa		32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	OAT	P04181	439 aa		32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	LGALS2	P05162	132 aa		32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	SLC26A2	P50443	739 aa		32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	CUL4B	Q13620	913 aa		32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	BRDT	Q58F21	947 aa	Predicted RBP	32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	GPBP1	Q86WP2	473 aa		32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	TRIM50	Q86XT4	487 aa		32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	CCDC43	Q96MW1	224 aa	Known RBP	32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	TRIM9	Q9C026	710 aa		32.06	■■■□□ 2.72
BRF1-213	ENST00000548421	ARHGEF35	A5YM69	484 aa		32.05	■■■□□ 2.72
BRF1-213	ENST00000548421	MYMK	A6NI61	221 aa		32.05	■■■□□ 2.72
BRF1-213	ENST00000548421	SMC2	O95347	1197 aa		32.05	■■■□□ 2.72
BRF1-213	ENST00000548421	ATP4A	P20648	1035 aa		32.05	■■■□□ 2.72
BRF1-213	ENST00000548421	CASP1	P29466	404 aa		32.05	■■■□□ 2.72
BRF1-213	ENST00000548421	CTCF	P49711	727 aa	Predicted RBP	32.05	■■■□□ 2.72
BRF1-213	ENST00000548421	RARRES1	P49788	294 aa		32.05	■■■□□ 2.72
BRF1-213	ENST00000548421	ANO5	Q75V66	913 aa		32.05	■■■□□ 2.72
BRF1-213	ENST00000548421	FAM167A	Q96KS9	214 aa		32.05	■■■□□ 2.72
BRF1-213	ENST00000548421	CYP11B2	P19099	503 aa		32.04	■■■□□ 2.72
BRF1-213	ENST00000548421	GJA9	P57773	515 aa		32.04	■■■□□ 2.72
BRF1-213	ENST00000548421	TRMT1L	Q7Z2T5	733 aa	Known RBP	32.04	■■■□□ 2.72
BRF1-213	ENST00000548421	SMARCE1	Q969G3	411 aa		32.04	■■■□□ 2.72
BRF1-213	ENST00000548421	SEPT9	Q9UHD8	586 aa	Predicted RBP	32.04	■■■□□ 2.72
BRF1-213	ENST00000548421	PCDHA5	Q9Y5H7	936 aa		32.04	■■■□□ 2.72
BRF1-213	ENST00000548421	CNNM4	Q6P4Q7	775 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	SPATA20	Q8TB22	786 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	UPF3A	Q9H1J1	476 aa	Known RBP	32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	SPC25	Q9HBM1	224 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	BMP2K	Q9NSY1	1161 aa	Predicted RBP	32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	ERAP1	Q9NZ08	941 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	TUBE1	Q9UJT0	475 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	SYNRG	Q9UMZ2	1314 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	TMEM150B	A6NC51	233 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	LBX1	P52954	281 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	FSCN1	Q16658	493 aa	Known RBP	32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	XKR9	Q5GH70	373 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	NT5DC1	Q5TFE4	455 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	PLA2G4F	Q68DD2	849 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	DDX12P	Q92771	950 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	HMX1	Q9NP08	348 aa	Predicted RBP	32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	NRBP2	Q9NSY0	501 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	KCND2	Q9NZV8	630 aa		32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	DDX20	Q9UHI6	824 aa	Known RBP	32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	ZNF215	Q9UL58	517 aa	Predicted RBP	32.03	■■■□□ 2.72
BRF1-213	ENST00000548421	ZNF286B	P0CG31	522 aa		32.02	■■■□□ 2.72
BRF1-213	ENST00000548421	MARK3	P27448	753 aa		32.02	■■■□□ 2.72
BRF1-213	ENST00000548421	ARSH	Q5FYA8	562 aa		32.02	■■■□□ 2.72
BRF1-213	ENST00000548421	RINT1	Q6NUQ1	792 aa		32.02	■■■□□ 2.72
BRF1-213	ENST00000548421	CTU1	Q7Z7A3	348 aa	Known RBP	32.02	■■■□□ 2.72
BRF1-213	ENST00000548421	SH3TC2	Q8TF17	1288 aa		32.02	■■■□□ 2.72
BRF1-213	ENST00000548421	BBX	Q8WY36	941 aa	Predicted RBP	32.02	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms